Hardware acceleration of the pair HMM algorithm for DNA variant calling

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Name thesis:degree_name

M.S.

Level thesis:degree_level

Thesis

Discipline thesis:degree_discipline

Electrical & Computer Engr

Grantor

University of Illinois at Urbana-Champaign

Year dc:date

2017

Author dc:creator

• Huang, Sitao

Contributors dc:contributor

• Chen, Deming
• Hwu, Wen-Mei M

• Hardware acceleration
• Field-programmable gate array (FPGA)
• Forward algorithm
• Pair hidden Markov model (HMM)
• Computational genomics
• Processing element (PE) ring

Statement dc:rights

• Copyright 2017 Sitao Huang

Language dc:language

en

Handle dc:identifier

http://hdl.handle.net/2142/97496

OAI identifier oai:identifier

oai:www.ideals.illinois.edu:2142/97496