Exploring Downhill Protein Folding Free Energy Landscapes

Downhill protein folding, i.e., folding with the free energy barrier comparable to the thermal energy kBT, is investigated by combining laser induced temperature-jump kinetics measurements and Langevin dynamics simulations. A kinetic and thermodynamic survey of multiple WW domain mutants is performed in combination with a model to reveal the correlation between protein stability and downhill folding propensity. A designed histidine containing lambda repressor mutant is identified to be a downhill folder even at its melting temperature, showing both thermodynamic and kinetic signatures of downhill folding for the first time. All the reported downhill folders are classified based on their typical downhill folding free energy building blocks using Langevin dynamics simulations.

Name thesis:degree_name

Ph.D.

Level thesis:degree_level

Dissertation

Discipline thesis:degree_discipline

Biophysics and Computational Biology

Grantor

University of Illinois at Urbana-Champaign

Year dc:date

2015

Author dc:creator

• Liu, Feng

Contributors dc:contributor

• Martin Gruebele

• Biophysics, General

Language dc:language

eng

Identifier

(MiAaPQ)AAI3363020

OAI identifier oai:identifier

oai:www.ideals.illinois.edu:2142/85476