Global ETD Search
Search theses and dissertations gathered from participating repositories worldwide. Every result links back to the library that holds it. No account is needed.
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Showing 1 to 20 of 77 for “"PDB"”.
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Programación de una librería de Python capaz de leer ficheros PDB para representar proteínas en 3D
… mediante el procesado de archivos PDB. Para ello, se utilizaron las herramientas ofrecidas por BioPython para el procesado de datos, y las librerías matplotlib y VisPy para la visualización de los datos procesados. El resultado de este trabajo es un programa cuya interfaz gráfica …
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Data mining of tetraloop-tetraloop receptors in RNA XML files
… receptor is to search for all potential PDB (Protein Data Bank) files that contain the particular RNA Motif. Once all the PDB files have been allocated, each individual file will need to be processed by RNAView to convert them to Xml format. Xml files are excellent in that they give a …
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Protein interaction studies on the titin A150 domain using proximity-dependent biotinylation
… this study, proximity dependent biotinylation (PDB) was used to screen for protein interactions. PDB was conducted using the biotin-ligase UltraID fused to a titin fragment. This study encompasses the creation of the titin-UltraID fusion genes, the functional validation of the titin UltraID …
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Fluidassoziierte Brekzien als Monitor dolomitisierender und dedolomitisierender Lösungsströme in der Kantabrischen Zone (Nordspanien)
… Schwankungsbereich (-12,73 bis 1,51 d18O ? PDB). Die d13C-Werte (PDB) zeigen keine große Varianz (2,56 bis 5,43 d13C ? PDB). Die Dolomite der Brekzienlokalitäten weisen geringere d18O- (PDB) und d13C-Werte auf. Die geringsten d18O- und d13C-Werte befinden sich in den Calciten. Die in dieser …
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Análisis, diseño y construcción de un proveedor de bus para sistemas de distribución en corriente continua domésticos
… doméstico. El diseño de este Proveedor de Bus (PdB) se ha optimizado para operar con una alta eficiencia y una buena calidad de suministro eléctrico, gestionando flujos de potencia bidireccionales. Se estudia además la interacción entre el PdB y las cargas y fuentes de energía conectadas por el …
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Development of Neural Networks for Biomolecular Structure Prediction with Applications to Protein Design
… biomolecular complexes in the Protein Data Bank (PDB). We then demonstrated the ability of this model to predict the structure of new complexes with high accuracy. Subsequently, we applied this model of native biomolecular complexes to the design of de novo small molecule binding proteins and …
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Computational methods for the structure-based design of protein-binding peptides
… structural motifs from the Protein Data Bank (PDB). To sample peptide structures in the context of a target protein, I mine tertiary motifs from known structures in the PDB to identify surface-complementing fragments or “seeds”. I show that TERM-based seeds can describe known binding structures …
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Analysis and Error Correction in Structures of Macromolecular Interiors and Interfaces
<p>As of late 2009, the Protein Data Bank (PDB) has grown to contain over 70,000 models. This recent increase in the amount of structural data allows for more extensive explication of the governing principles of macromolecular folding and association to complement traditional studies focused on a …
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Characterising the role of Valosin Containing Protein (VCP) in autophagy and cell differentiation.
… differentiation in Paget disease of the bone (PDB) are not completely understood. To gain insight into disease phenotype associated with VCP mutations I examined the role of VCP in autophagy and the role of autophagy on osteoclastogenesis. I have shown that VCP co-localises with p62 and LC3 at …
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Geology of Sub-Salt Carbonate Rocks in the Rozhkovsky Structure, Northern Precaspian Basin, Kazakhstan: Implications for the Formation of Carbonate Reservoir in a Relatively Closed Diagenetic System
… and δ13C values range from -9.94 to -3.5‰, V-PDB and +2.08 to +6.4‰, V-PDB, respectively, for calcite cements from -5.7 to -4.14‰, V-PDB and +3.51 to +5.2‰, V-PDB, respectively for dolomite. These values are similar to expected values precipitated from the Early Carboniferous seawater, …
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Protein Loop Length Estimation From Medium Resolution Cryoem Images
… have been atomically modeled and deposited to PDB (Protein Databank). Cryoelectron Microscopy (cryoEM) is an important biophysical technique that produces 3D subnanometer resolution images of molecules not amenable to past approaches like x-ray crystallography or nuclear magnetic resonance. De …
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Dirbtinio intelekto panaudojimo tyrimas baltymų analizei /
… prediction of the LH1-RC complex from the PDB database; to investigate the applicability of deep, fully connected neural networks for part and all of the selected LH1-RC complex from the PDB database. The blastochloris viridis LH1-RC complex from the RCSB PDB database, with identification …
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Heuweltjies : a window into the palaeoclimate and palaeovegetation of the Western Cape?
… values vary from -7.4%. to -4.9%0 relative to PDB. whereas 15180 vary from 28.05'160 to 30.91%0 relative to SMOW.
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Warten auf die Transkription: Die humanen Elongationsfaktoren NELF und DSIF
… magnetischer Kernresonanz (NMR) bestimmt (PDB: 2BZ2) und besteht aus einem viersträngigen Faltblatt mit zwei alpha-Helices, die gegen eine Seite des Faltblattes packen. An der RNA-Bindung sind die zentralen beta-Stränge mit den beiden aromatischen Resten Tyr43 und Phe77 aus dem …
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Robust and Efficient Algorithms for Protein 3-D Structure Alignment and Genome Sequence Comparison
… with structures from the Protein Data Bank (PDB). In many cases it outperforms two other well-known algorithms, DaliLite and CE. The preliminary algorithm is a graph-theory based approach, which uses the concept of \stars" to reduce the complexity of clique-finding algorithms. The algorithm …
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Computational structure analysis and prediction of Ser/Thr modified by O-GlcNAc in human proteins
… sites were mapped to protein 3D structure in the PDB. Modified S/T were 1.7 times more likely than unmodified S/T in the same protein to be annotated in the REMARK465 field of the PDB file, which defines missing regions in the protein structure, suggesting that these sites may be in structurally …
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Statistical Analysis of Biological Interactions from Homologous Proteins
… unit information from the Protein Data Bank (PDB), Protein Quaternary Server (PQS) and Protein Interfaces, Surfaces and Assemblies (PISA) server, and compared the three biological units side-by-side. The statistical analyses show that the inconsistency within these databases and between them …
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The Structural Characterization and Bioactivity Assessment of Nonspecific Lipid Transfer Protein 1 (nsLTP1) from Caraway (Carum Carvi) Seeds
… based on searching known structures in the PDB. We chose nsLTP of Solanum melongena (PDB ID: 5TVI) as the modeling template with the lowest E-value among other homologous proteins. Docking linolenic acid with caraway protein showed a maximum binding score of -3.6 Kcal/mol. A preliminary …
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De novo Design of Mini-Protein Binders Targeting Allosteric Sites of MALT1 Towards Cancer Therapeutics
… επιφάνεια της δομικής επικράτειας παρακασπάσης (PDB: 3V55, apo διαμόρφωση, hotspots V395, L440, I445, L448) και τη Θέση 2 στη διεπαφή των περιοχών παρακασπάσης/Ig3 (PDB: 6H4A, holo διαμόρφωση, hotspots V381, L383, N393, L401), με στόχο τον εντοπισμό ενός ποικιλόμορφου συνόλου υποψηφίων μορίων …
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Coccoliths and oxygen isotope observations from the sediment surface of the southwest Indian Ocean
… Lightest isotope ratios of -1.5 to -1.0 per mil PDB (equal to 22.8 to 25.1°C) occur in a narrow band on the sea floor beneath the "A" route of the Agulhas Current. These values are about 0.5 per mil PDB lighter than samples analyzed on either side of this band and can be explained by the Agulhas …
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