The effects of common carp on zooplankton communities using morphological and molecular techniques
type: CreativeWork
description: Understanding the factors causing a decline of water quality is important to ecologists, but particularly challenging given the complexity of natural systems. New Zealand’s freshwater ecosystems are under threat from increased eutrophication, and in the Waikato region this is intensified with the presence of common carp (Cyprinus carpio). The overall aim of this thesis was to capture the environmental and biological changes of a natural pond environment when carp were introduced at a high density, and to develop and test a DNA based approach of assessing zooplankton communities for quick and easy monitoring of lakes. The ecological aspect of this thesis explored how carp influenced the physical and chemical variables, as well as the biological communities of a shallow lake environment. Suspended sediments and nitrogen increased in the presence of carp. The zooplankton communities changed through time and were associated with small suspended sediments, but there was no observed influence on the zooplankton community driven by carp. This study illustrates how a new introduction of carp may have little impact on an already degraded system, such as those commonly seen in the Waikato region. The genetic component of this thesis aimed to determine the suitability of the 28S nuclear gene region as an ecological tool used in the routine monitoring of lakes. A reference library was created with 336 zooplankton individuals, including 60 rotifer, nine cladoceran, and seven copepod taxa. Sequence success was high (79%) and support for identification was generally high at the species level. These findings showed that the 28S region could be used to sample entire zooplankton communities taken from natural environments. Next generation sequencing was used to sequence the entire zooplankton communities and test the effectiveness of 28S to capture the abundant and less abundant taxa, and ultimately determine its use as a tool for ecologists. Samples were identified and counted prior…
abstract: Understanding the factors causing a decline of water quality is important to ecologists, but particularly challenging given the complexity of natural systems. New Zealand’s freshwater ecosystems are under threat from increased eutrophication, and in the Waikato region this is intensified with the presence of common carp (Cyprinus carpio). The overall aim of this thesis was to capture the environmental and biological changes of a natural pond environment when carp were introduced at a high density, and to develop and test a DNA based approach of assessing zooplankton communities for quick and easy monitoring of lakes. The ecological aspect of this thesis explored how carp influenced the physical and chemical variables, as well as the biological communities of a shallow lake environment. Suspended sediments and nitrogen increased in the presence of carp. The zooplankton communities changed through time and were associated with small suspended sediments, but there was no observed influence on the zooplankton community driven by carp. This study illustrates how a new introduction of carp may have little impact on an already degraded system, such as those commonly seen in the Waikato region. The genetic component of this thesis aimed to determine the suitability of the 28S nuclear gene region as an ecological tool used in the routine monitoring of lakes. A reference library was created with 336 zooplankton individuals, including 60 rotifer, nine cladoceran, and seven copepod taxa. Sequence success was high (79%) and support for identification was generally high at the species level. These findings showed that the 28S region could be used to sample entire zooplankton communities taken from natural environments. Next generation sequencing was used to sequence the entire zooplankton communities and test the effectiveness of 28S to capture the abundant and less abundant taxa, and ultimately determine its use as a tool for ecologists. Samples were identified and counted prior…
author: Woods, Steve
license: https://researchcommons.waikato.ac.nz/bitstreams/787ec464-c80a-4d11-8edc-d1cac00461c7/download
date published: 2018
date modified: 2026-07-24T05:57:52Z
provider: University Waikato
publisher: Networked Digital Library of Theses and Dissertations
type: WebPage
source organization: The University of Waikato