Plane Permutations and their Applications to Graph Embeddings and Genome Rearrangements

Maps have been extensively studied and are important in many research fields. A map is a 2-cell embedding of a graph on an orientable surface. Motivated by a new way to read the information provided by the skeleton of a map, we introduce new objects called plane permutations. Plane permutations not only provide new insight into enumeration of maps and related graph embedding problems, but they also provide a powerful framework to study less related genome rearrangement problems. As results, we refine and extend several existing results on enumeration of maps by counting plane permutations filtered by different criteria. In the spirit of the topological, graph theoretical study of graph embeddings, we study the behavior of graph embeddings under local changes. We obtain a local version of the interpolation theorem, local genus distribution as well as an easy-to-check necessary condition for a given embedding to be of minimum genus. Applying the plane permutation paradigm to genome rearrangement problems, we present a unified simple framework to study transposition distances and block-interchange distances of permutations as well as reversal distances of signed permutations. The essential idea is associating a plane permutation to a given permutation or signed permutation to sort, and then applying the developed plane permutation theory.

Name thesis:degree_name

Ph. D.

Level thesis:degree_level

doctoral

Discipline thesis:degree_discipline

Mathematics

Department dc:contributor.department

Mathematics

Grantor dc:publisher

Virginia Tech

Year dc:date.issued

2017

Author dc:creator

• Chen, Xiaofeng

Chair dc:contributor.committeechair

• Reidys, Christian Michael

Committee members dc:contributor.committeemember

• Mortveit, Henning S.
• Haskell, Peter E.
• Floyd, William J.

• Plane Permutation
• Map
• Graph Embedding
• Genome Rearrangement

Statement dc:rights

• In Copyright

Licence dc:rights.uri

• http://rightsstatements.org/vocab/InC/1.0/

Dc Identifier Other

vt_gsexam:10619

OAI identifier oai:identifier

oai:vtechworks.lib.vt.edu:10919/77535