{"id":{"repo_id":"uts","oai_identifier":"oai:opus.lib.uts.edu.au:10453/140251"},"canonical_url":"https://search.dev.ndltd.org/etd/uts/oai:opus.lib.uts.edu.au:10453/140251","repository":{"repo_id":"uts","name":"University of Technology Sydney","base_url":"https://opus.lib.uts.edu.au/oai/request"},"display":{"title":"Elucidating the chlamydial growth characteristics, infection factors, and host responses to persistent chlamydial infection in women","abstract":"𝘊𝘩𝘭𝘢𝘮𝘺𝘥𝘪𝘢 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 is an obligate intracellular parasite and the leading cause of sexually transmitted bacterial infections in the human urogenital tract. Clinical manifestations of chlamydial infection include urethritis, cervicitis, pelvic inflammatory disease and tubal factor infertility. These pathological conditions are caused by the immune response to both acute and chronic chlamydial infections. Evidence suggests a high proportion of infections remain subclinical until spontaneous resolution or the commencement of symptoms leads to a diagnosis. Therefore, a substantial proportion of the morbidity and burden associated with chlamydia can likely be attributed to unresolved and untreated infections. While treatment with azithromycin is highly effective, treatment failure does occur. The mechanisms of treatment failure and its effects on fertility are poorly understood. Unlike other bacterial pathogens, 𝘊. 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 lacks stable genotypic resistance to macrolides. Another key difference between 𝘊𝘩𝘭𝘢𝘮𝘺𝘥𝘪𝘢 and many other bacteria is the constant interaction with its host cell. Thus, it was hypothesised that the unique intracellular niche and developmental cycle of 𝘊. 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 are important microbial factors which could affect treatment efficacy. To test this, several host and chlamydial factors were investigated. 16S rRNA gene amplicon sequencing of vaginal and cervical swabs and endometrial biopsies from participants of a case-control fertility study revealed that similarities in the microbial populations of the vagina and cervix were not predictive of those in the endometrium. While there was no association between microbial community compositions and fertility status identified, 𝘜𝘳𝘦𝘢𝘱𝘭𝘢𝘴𝘮𝘢 spp. were overrepresented amongst infertile women. The endometrial expression of several genes involved in immunity and reproductive function showed no association with microbial community composition, however, the gene which encodes tenascin-C was over-expressed in women who had a self-reported history of miscarriage. Comparisons of clinical isolates from women treated for chlamydial infections showed no significant differences in developmental or stress phenotypes but suggested that the subtle differences observed using 𝘪𝘯 𝘷𝘪𝘵𝘳𝘰 models may not truly reflect the complexity of 𝘪𝘯 𝘷𝘪𝘷𝘰 infectious processes. Finally, analysis of host and chlamydial gene expression before and after antibiotic treatment showed no association with outcome but yielded valuable information about the host and pathogen during the period following treatment. In particular, chlamydial gene expression was upregulated after they had survived treatment with azithromycin. This project has contributed towards current knowledge and increases the field’s understanding of the host and chlamydial factors involved in treatment failure and infertility. Additionally, it provides insight for future investigations of these important and complex interactions between humans and the bacteria which have evolved alongside us.","abstract_html":"𝘊𝘩𝘭𝘢𝘮𝘺𝘥𝘪𝘢 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 is an obligate intracellular parasite and the leading cause of sexually transmitted bacterial infections in the human urogenital tract. Clinical manifestations of chlamydial infection include urethritis, cervicitis, pelvic inflammatory disease and tubal factor infertility. These pathological conditions are caused by the immune response to both acute and chronic chlamydial infections. Evidence suggests a high proportion of infections remain subclinical until spontaneous resolution or the commencement of symptoms leads to a diagnosis. Therefore, a substantial proportion of the morbidity and burden associated with chlamydia can likely be attributed to unresolved and untreated infections. While treatment with azithromycin is highly effective, treatment failure does occur. The mechanisms of treatment failure and its effects on fertility are poorly understood. Unlike other bacterial pathogens, 𝘊. 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 lacks stable genotypic resistance to macrolides. Another key difference between 𝘊𝘩𝘭𝘢𝘮𝘺𝘥𝘪𝘢 and many other bacteria is the constant interaction with its host cell. Thus, it was hypothesised that the unique intracellular niche and developmental cycle of 𝘊. 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 are important microbial factors which could affect treatment efficacy. To test this, several host and chlamydial factors were investigated. 16S rRNA gene amplicon sequencing of vaginal and cervical swabs and endometrial biopsies from participants of a case-control fertility study revealed that similarities in the microbial populations of the vagina and cervix were not predictive of those in the endometrium. While there was no association between microbial community compositions and fertility status identified, 𝘜𝘳𝘦𝘢𝘱𝘭𝘢𝘴𝘮𝘢 spp. were overrepresented amongst infertile women. The endometrial expression of several genes involved in immunity and reproductive function showed no association with microbial community composition, however, the gene which encodes tenascin-C was over-expressed in women who had a self-reported history of miscarriage. Comparisons of clinical isolates from women treated for chlamydial infections showed no significant differences in developmental or stress phenotypes but suggested that the subtle differences observed using 𝘪𝘯 𝘷𝘪𝘵𝘳𝘰 models may not truly reflect the complexity of 𝘪𝘯 𝘷𝘪𝘷𝘰 infectious processes. Finally, analysis of host and chlamydial gene expression before and after antibiotic treatment showed no association with outcome but yielded valuable information about the host and pathogen during the period following treatment. In particular, chlamydial gene expression was upregulated after they had survived treatment with azithromycin. This project has contributed towards current knowledge and increases the field’s understanding of the host and chlamydial factors involved in treatment failure and infertility. Additionally, it provides insight for future investigations of these important and complex interactions between humans and the bacteria which have evolved alongside us.","abstract_has_math":false,"creators":["Thomas, Mark"],"institution":null,"degree_name":null,"degree_level":null,"degree_discipline":null,"degree_department":null,"school":null,"contributors":[],"advisors":[],"committee_chairs":[],"committee_members":[],"year":2019,"date_issued":"2019","date_published":"2019","updated_at":"2026-07-24T06:32:42Z","subjects":[],"languages":["en_AU"],"rights":["The author owns the copyright in this thesis including all reproduction and reuse rights for the work. The work may not be altered without the permission of the copyright owner. Attribution is essential when quoting or paraphrasing from this thesis.","au.edu.uts.lib/ppc","info:eu-repo/semantics/openAccess"],"rights_urls":[],"identifier_entries":[]},"links":{"outbound_url":"http://hdl.handle.net/10453/140251","outbound_label":"Handle","outbound_source":"dc:identifier.uri"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:creator","label":"Author","values":["Thomas, Mark"]}]},{"id":"academic_context","label":"Academic Context","entries":[{"key":"dc:date.accessioned","label":"Dc Date Accessioned","values":["2020-04-24T02:09:38Z"]},{"key":"dc:date.available","label":"Dc Date Available","values":["2020-04-24T02:09:38Z"]},{"key":"dc:date.issued","label":"Date","values":["2019"]},{"key":"dc:relation","label":"Dc Relation","values":["https://opus.lib.uts.edu.au/bitstream/10453/140251/2/02whole.pdf"]},{"key":"dc:type","label":"Dc Type","values":["Thesis"]}]},{"id":"language_rights","label":"Language and Rights","entries":[{"key":"dc:language.iso","label":"Language (ISO)","values":["en_AU"]},{"key":"dc:rights","label":"Dc Rights","values":["The author owns the copyright in this thesis including all reproduction and reuse rights for the work. The work may not be altered without the permission of the copyright owner. Attribution is essential when quoting or paraphrasing from this thesis.","au.edu.uts.lib/ppc","info:eu-repo/semantics/openAccess"]}]},{"id":"identifiers","label":"Identifiers","entries":[{"key":"dc:identifier.uri","label":"Identifier URI","values":["http://hdl.handle.net/10453/140251"]}]},{"id":"additional","label":"Additional Metadata","entries":[{"key":"dc:description","label":"Description","values":["University of Technology Sydney. Faculty of Science."]},{"key":"dc:description.abstract","label":"Abstract","values":["𝘊𝘩𝘭𝘢𝘮𝘺𝘥𝘪𝘢 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 is an obligate intracellular parasite and the leading cause of sexually transmitted bacterial infections in the human urogenital tract. Clinical manifestations of chlamydial infection include urethritis, cervicitis, pelvic inflammatory disease and tubal factor infertility. These pathological conditions are caused by the immune response to both acute and chronic chlamydial infections. Evidence suggests a high proportion of infections remain subclinical until spontaneous resolution or the commencement of symptoms leads to a diagnosis. Therefore, a substantial proportion of the morbidity and burden associated with chlamydia can likely be attributed to unresolved and untreated infections. While treatment with azithromycin is highly effective, treatment failure does occur. The mechanisms of treatment failure and its effects on fertility are poorly understood. Unlike other bacterial pathogens, 𝘊. 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 lacks stable genotypic resistance to macrolides. Another key difference between 𝘊𝘩𝘭𝘢𝘮𝘺𝘥𝘪𝘢 and many other bacteria is the constant interaction with its host cell. Thus, it was hypothesised that the unique intracellular niche and developmental cycle of 𝘊. 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 are important microbial factors which could affect treatment efficacy. To test this, several host and chlamydial factors were investigated. 16S rRNA gene amplicon sequencing of vaginal and cervical swabs and endometrial biopsies from participants of a case-control fertility study revealed that similarities in the microbial populations of the vagina and cervix were not predictive of those in the endometrium. While there was no association between microbial community compositions and fertility status identified, 𝘜𝘳𝘦𝘢𝘱𝘭𝘢𝘴𝘮𝘢 spp. were overrepresented amongst infertile women. The endometrial expression of several genes involved in immunity and reproductive function showed no association with microbial community composition, however, the gene which encodes tenascin-C was over-expressed in women who had a self-reported history of miscarriage. Comparisons of clinical isolates from women treated for chlamydial infections showed no significant differences in developmental or stress phenotypes but suggested that the subtle differences observed using 𝘪𝘯 𝘷𝘪𝘵𝘳𝘰 models may not truly reflect the complexity of 𝘪𝘯 𝘷𝘪𝘷𝘰 infectious processes. Finally, analysis of host and chlamydial gene expression before and after antibiotic treatment showed no association with outcome but yielded valuable information about the host and pathogen during the period following treatment. In particular, chlamydial gene expression was upregulated after they had survived treatment with azithromycin. This project has contributed towards current knowledge and increases the field’s understanding of the host and chlamydial factors involved in treatment failure and infertility. Additionally, it provides insight for future investigations of these important and complex interactions between humans and the bacteria which have evolved alongside us."]},{"key":"dc:format","label":"Dc Format","values":["Thesis (PhD)"]},{"key":"dc:title","label":"Title","values":["Elucidating the chlamydial growth characteristics, infection factors, and host responses to persistent chlamydial infection in women"]}]}],"canonical_facts":{"dc:creator":["Thomas, Mark"],"dc:date.accessioned":["2020-04-24T02:09:38Z"],"dc:date.available":["2020-04-24T02:09:38Z"],"dc:date.issued":["2019"],"dc:description":["University of Technology Sydney. Faculty of Science."],"dc:description.abstract":["𝘊𝘩𝘭𝘢𝘮𝘺𝘥𝘪𝘢 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 is an obligate intracellular parasite and the leading cause of sexually transmitted bacterial infections in the human urogenital tract. Clinical manifestations of chlamydial infection include urethritis, cervicitis, pelvic inflammatory disease and tubal factor infertility. These pathological conditions are caused by the immune response to both acute and chronic chlamydial infections. Evidence suggests a high proportion of infections remain subclinical until spontaneous resolution or the commencement of symptoms leads to a diagnosis. Therefore, a substantial proportion of the morbidity and burden associated with chlamydia can likely be attributed to unresolved and untreated infections. While treatment with azithromycin is highly effective, treatment failure does occur. The mechanisms of treatment failure and its effects on fertility are poorly understood. Unlike other bacterial pathogens, 𝘊. 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 lacks stable genotypic resistance to macrolides. Another key difference between 𝘊𝘩𝘭𝘢𝘮𝘺𝘥𝘪𝘢 and many other bacteria is the constant interaction with its host cell. Thus, it was hypothesised that the unique intracellular niche and developmental cycle of 𝘊. 𝘵𝘳𝘢𝘤𝘩𝘰𝘮𝘢𝘵𝘪𝘴 are important microbial factors which could affect treatment efficacy. To test this, several host and chlamydial factors were investigated. 16S rRNA gene amplicon sequencing of vaginal and cervical swabs and endometrial biopsies from participants of a case-control fertility study revealed that similarities in the microbial populations of the vagina and cervix were not predictive of those in the endometrium. While there was no association between microbial community compositions and fertility status identified, 𝘜𝘳𝘦𝘢𝘱𝘭𝘢𝘴𝘮𝘢 spp. were overrepresented amongst infertile women. The endometrial expression of several genes involved in immunity and reproductive function showed no association with microbial community composition, however, the gene which encodes tenascin-C was over-expressed in women who had a self-reported history of miscarriage. Comparisons of clinical isolates from women treated for chlamydial infections showed no significant differences in developmental or stress phenotypes but suggested that the subtle differences observed using 𝘪𝘯 𝘷𝘪𝘵𝘳𝘰 models may not truly reflect the complexity of 𝘪𝘯 𝘷𝘪𝘷𝘰 infectious processes. Finally, analysis of host and chlamydial gene expression before and after antibiotic treatment showed no association with outcome but yielded valuable information about the host and pathogen during the period following treatment. In particular, chlamydial gene expression was upregulated after they had survived treatment with azithromycin. This project has contributed towards current knowledge and increases the field’s understanding of the host and chlamydial factors involved in treatment failure and infertility. Additionally, it provides insight for future investigations of these important and complex interactions between humans and the bacteria which have evolved alongside us."],"dc:format":["Thesis (PhD)"],"dc:identifier.uri":["http://hdl.handle.net/10453/140251"],"dc:language.iso":["en_AU"],"dc:relation":["https://opus.lib.uts.edu.au/bitstream/10453/140251/2/02whole.pdf"],"dc:rights":["The author owns the copyright in this thesis including all reproduction and reuse rights for the work. The work may not be altered without the permission of the copyright owner. Attribution is essential when quoting or paraphrasing from this thesis.","au.edu.uts.lib/ppc","info:eu-repo/semantics/openAccess"],"dc:title":["Elucidating the chlamydial growth characteristics, infection factors, and host responses to persistent chlamydial infection in women"],"dc:type":["Thesis"]},"updated_at":"2026-07-24T06:32:42Z"}