Migratory birds often serve as natural/accidental hosts to ectoparasites like ticks (predominantly immature stages) and are known reservoirs of several pathogens transmitted by ticks. Parasitizing these birds, exotic tick species often hitch rides to non-native ecological niches, bringing along tick-borne pathogens. This study aims to profile the bacteriome of exotic tick species flying in and out of the US from the Neo-tropical South. A total of 421 tick samples comprised of several different tick species were collected off migratory songbirds at sites north of the Gulf of Mexico (Louisiana State). A 16S rRNA metagenomic multiplexed sequencing approach was used to assess the microbial communities associated with these exotic tick species. The sequencing generated >11 million reads from 400 libraries, an average of 27,253 reads/library; the total number of OTUs obtained was 20,153. Collected ticks belonged to Amblyomma, Ixodes, and Haemaphysalis genera; their bacteriome was predominantly dominated by Francisella, with a varying abundance of Rickettsia, Candidatus Midichloria mitochondrii and Cutibacterium (actinobacteria). Co-occurrence of Coxiella and Francisella were observed in three species: Amblyomma geayi, Amblyomma coelebs, and Amblyomma calacaratum. Coxiella had majority in only Amblyomma geayi. The overall highest diversity at genus level was found in Ixodes genera. Spotted fever group rickettsiae were detected in samples of Amblyomma sabanerae and Amblyomma maculatum. These findings provide an insight into the bacterial communities residing within the tick species parasitizing migratory birds.
","abstract_html":"<p>Migratory birds often serve as natural/accidental hosts to ectoparasites like ticks (predominantly immature stages) and are known reservoirs of several pathogens transmitted by ticks. Parasitizing these birds, exotic tick species often hitch rides to non-native ecological niches, bringing along tick-borne pathogens. This study aims to profile the bacteriome of exotic tick species flying in and out of the US from the Neo-tropical South. A total of 421 tick samples comprised of several different tick species were collected off migratory songbirds at sites north of the Gulf of Mexico (Louisiana State). A 16S rRNA metagenomic multiplexed sequencing approach was used to assess the microbial communities associated with these exotic tick species. The sequencing generated >11 million reads from 400 libraries, an average of 27,253 reads/library; the total number of OTUs obtained was 20,153. Collected ticks belonged to <em>Amblyomma, Ixodes,</em> and <em>Haemaphysalis</em> genera; their bacteriome was predominantly dominated by <em>Francisella, </em>with a varying abundance of <em>Rickettsia, Candidatus Midichloria mitochondrii </em>and<em> Cutibacterium </em>(actinobacteria). Co-occurrence of <em>Coxiella </em>and <em>Francisella </em>were observed in three species: <em>Amblyomma geayi, Amblyomma coelebs, and Amblyomma calacaratum</em>. <em>Coxiella </em>had majority in only <em>Amblyomma geayi</em>. The overall highest diversity at genus level was found in <em>Ixodes</em> genera. Spotted fever group rickettsiae were detected in samples of <em>Amblyomma sabanerae</em> and <em>Amblyomma maculatum</em>. These findings provide an insight into the bacterial communities residing within the tick species parasitizing migratory birds.</p>","abstract_has_math":false,"creators":["Sen, Raima"],"institution":null,"degree_name":"Master of Science (MS)","degree_level":"Masters Thesis","degree_discipline":null,"degree_department":null,"school":null,"contributors":["Dr. Shahid Karim","Dr. Fengwei Bai","Dr. Alex Flynt"],"advisors":[],"committee_chairs":[],"committee_members":[],"year":2021,"date_issued":"2021-08-01T07:00:00Z","date_published":"2021-08-01T07:00:00Z","updated_at":"2026-07-24T05:45:33Z","subjects":["Exotic neotropical ticks; migratory birds; bacterial microbiome; Qiime2; 16S metagenomic multiplex sequencing","Biotechnology","Entomology"],"languages":[],"rights":[],"rights_urls":[],"identifier_entries":[]},"links":{"outbound_url":"https://aquila.usm.edu/masters_theses/839","outbound_label":"Repository record","outbound_source":"dc:identifier"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:contributor","label":"Contributor","values":["Dr. Shahid Karim","Dr. Fengwei Bai","Dr. Alex Flynt"]},{"key":"dc:creator","label":"Author","values":["Sen, Raima"]}]},{"id":"academic_context","label":"Academic Context","entries":[{"key":"dc:date.available","label":"Dc Date Available","values":["2023-06-21T07:00:00Z"]},{"key":"thesis:degree_level","label":"Degree Level","values":["Masters Thesis"]},{"key":"thesis:degree_name","label":"Degree Name","values":["Master of Science (MS)"]}]},{"id":"subjects_keywords","label":"Subjects and Keywords","entries":[{"key":"dc:subject","label":"Dc Subject","values":["Exotic neotropical ticks; migratory birds; bacterial microbiome; Qiime2; 16S metagenomic multiplex sequencing","Biotechnology","Entomology"]}]},{"id":"identifiers","label":"Identifiers","entries":[{"key":"dc:identifier","label":"Identifier","values":["https://aquila.usm.edu/masters_theses/839"]}]},{"id":"additional","label":"Additional Metadata","entries":[{"key":"dc:description.abstract","label":"Abstract","values":["Migratory birds often serve as natural/accidental hosts to ectoparasites like ticks (predominantly immature stages) and are known reservoirs of several pathogens transmitted by ticks. Parasitizing these birds, exotic tick species often hitch rides to non-native ecological niches, bringing along tick-borne pathogens. This study aims to profile the bacteriome of exotic tick species flying in and out of the US from the Neo-tropical South. A total of 421 tick samples comprised of several different tick species were collected off migratory songbirds at sites north of the Gulf of Mexico (Louisiana State). A 16S rRNA metagenomic multiplexed sequencing approach was used to assess the microbial communities associated with these exotic tick species. The sequencing generated >11 million reads from 400 libraries, an average of 27,253 reads/library; the total number of OTUs obtained was 20,153. Collected ticks belonged to Amblyomma, Ixodes, and Haemaphysalis genera; their bacteriome was predominantly dominated by Francisella, with a varying abundance of Rickettsia, Candidatus Midichloria mitochondrii and Cutibacterium (actinobacteria). Co-occurrence of Coxiella and Francisella were observed in three species: Amblyomma geayi, Amblyomma coelebs, and Amblyomma calacaratum. Coxiella had majority in only Amblyomma geayi. The overall highest diversity at genus level was found in Ixodes genera. Spotted fever group rickettsiae were detected in samples of Amblyomma sabanerae and Amblyomma maculatum. These findings provide an insight into the bacterial communities residing within the tick species parasitizing migratory birds.
"]},{"key":"dc:title","label":"Title","values":["Characterization of the Bacterial Microbiome of Exotic Tick Species Collected from Migratory Birds"]}]}],"canonical_facts":{"dc:contributor":["Dr. Shahid Karim","Dr. Fengwei Bai","Dr. Alex Flynt"],"dc:creator":["Sen, Raima"],"dc:date.available":["2023-06-21T07:00:00Z"],"dc:description.abstract":["Migratory birds often serve as natural/accidental hosts to ectoparasites like ticks (predominantly immature stages) and are known reservoirs of several pathogens transmitted by ticks. Parasitizing these birds, exotic tick species often hitch rides to non-native ecological niches, bringing along tick-borne pathogens. This study aims to profile the bacteriome of exotic tick species flying in and out of the US from the Neo-tropical South. A total of 421 tick samples comprised of several different tick species were collected off migratory songbirds at sites north of the Gulf of Mexico (Louisiana State). A 16S rRNA metagenomic multiplexed sequencing approach was used to assess the microbial communities associated with these exotic tick species. The sequencing generated >11 million reads from 400 libraries, an average of 27,253 reads/library; the total number of OTUs obtained was 20,153. Collected ticks belonged to Amblyomma, Ixodes, and Haemaphysalis genera; their bacteriome was predominantly dominated by Francisella, with a varying abundance of Rickettsia, Candidatus Midichloria mitochondrii and Cutibacterium (actinobacteria). Co-occurrence of Coxiella and Francisella were observed in three species: Amblyomma geayi, Amblyomma coelebs, and Amblyomma calacaratum. Coxiella had majority in only Amblyomma geayi. The overall highest diversity at genus level was found in Ixodes genera. Spotted fever group rickettsiae were detected in samples of Amblyomma sabanerae and Amblyomma maculatum. These findings provide an insight into the bacterial communities residing within the tick species parasitizing migratory birds.
"],"dc:identifier":["https://aquila.usm.edu/masters_theses/839"],"dc:subject":["Exotic neotropical ticks; migratory birds; bacterial microbiome; Qiime2; 16S metagenomic multiplex sequencing","Biotechnology","Entomology"],"dc:title":["Characterization of the Bacterial Microbiome of Exotic Tick Species Collected from Migratory Birds"],"thesis:degree_level":["Masters Thesis"],"thesis:degree_name":["Master of Science (MS)"]},"updated_at":"2026-07-24T05:45:33Z"}