{"id":{"repo_id":"uiuc","oai_identifier":"oai:www.ideals.illinois.edu:2142/24444"},"canonical_url":"https://search.dev.ndltd.org/etd/uiuc/oai:www.ideals.illinois.edu:2142/24444","repository":{"repo_id":"uiuc","name":"University of Illinois - Urbana-Champaign","base_url":"https://www.ideals.illinois.edu/oai-pmh"},"display":{"title":"Assembly and analysis of the miscanthus × giganteus transcriptome","abstract":"Made available in DSpace on 2011-05-25T14:27:55Z (GMT). No. of bitstreams: 2 Barling_Adam.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5) license.txt: 4061 bytes, checksum: 61fe40f251d63ab03773551d76de0942 (MD5)","abstract_html":"Made available in DSpace on 2011-05-25T14:27:55Z (GMT). No. of bitstreams: 2 Barling_Adam.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5) license.txt: 4061 bytes, checksum: 61fe40f251d63ab03773551d76de0942 (MD5)","abstract_has_math":false,"creators":["Barling, Adam R."],"institution":"University of Illinois at Urbana-Champaign","degree_name":"M.S.","degree_level":"Thesis","degree_discipline":"Crop Sciences","degree_department":null,"school":null,"contributors":["Moose, Stephen P."],"advisors":[],"committee_chairs":[],"committee_members":[],"year":2011,"date_issued":"2011-05-25T14:27:55Z","date_published":"2011-05-25T14:27:55Z","updated_at":"2026-07-22T22:25:23Z","subjects":["Miscanthus","Transcriptome","Sequencing","Biofuel","Bioenergy"],"languages":["en"],"rights":["Copyright 2011 Adam R. Barling"],"rights_urls":[],"identifier_entries":[]},"links":{"outbound_url":"http://hdl.handle.net/2142/24444","outbound_label":"Handle","outbound_source":"dc:identifier"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:contributor","label":"Contributor","values":["Moose, Stephen P."]},{"key":"dc:creator","label":"Author","values":["Barling, Adam R."]}]},{"id":"academic_context","label":"Academic Context","entries":[{"key":"dc:date","label":"Dc Date","values":["2011-05-25T14:27:55Z","2013-05-26T10:00:16Z","2011-05"]},{"key":"thesis:degree_discipline","label":"Discipline","values":["Crop Sciences"]},{"key":"thesis:degree_level","label":"Degree Level","values":["Thesis"]},{"key":"thesis:degree_name","label":"Degree Name","values":["M.S."]},{"key":"thesis:institution_name","label":"Thesis Institution Name","values":["University of Illinois at Urbana-Champaign"]}]},{"id":"subjects_keywords","label":"Subjects and Keywords","entries":[{"key":"dc:subject","label":"Dc Subject","values":["Miscanthus","Transcriptome","Sequencing","Biofuel","Bioenergy"]}]},{"id":"language_rights","label":"Language and Rights","entries":[{"key":"dc:language","label":"Dc Language","values":["en"]},{"key":"dc:rights","label":"Dc Rights","values":["Copyright 2011 Adam R. Barling"]}]},{"id":"identifiers","label":"Identifiers","entries":[{"key":"dc:identifier","label":"Identifier","values":["http://hdl.handle.net/2142/24444"]}]},{"id":"additional","label":"Additional Metadata","entries":[{"key":"dc:description","label":"Description","values":["Made available in DSpace on 2011-05-25T14:27:55Z (GMT). No. of bitstreams: 2 Barling_Adam.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5) license.txt: 4061 bytes, checksum: 61fe40f251d63ab03773551d76de0942 (MD5)","Item marked as restricted to the 'Administrator' Group (id=1) by William Ingram (wingram2@illinois.edu) on 2011-05-25T14:29:38Z Item is restricted until 2013-05-25T14:29:35Z","Item reinstated by Sarah Shreeves (sshreeve@illinois.edu) on 2013-05-26T10:00:16Z Item was in collections: University of Illinois Dissertations and Theses (ID: 204) Theses and Dissertations - Crop Sciences (ID: 681) No. of bitstreams: 3 Barling_Adam.pdf.txt: 125383 bytes, checksum: 2a7d866396d8cfa220d6a9670eaa5de3 (MD5) Barling_Adam.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5) license.txt: 4061 bytes, checksum: 61fe40f251d63ab03773551d76de0942 (MD5)","Item released from any restrictions by Sarah Shreeves (sshreeve@illinois.edu) on 2013-05-26T10:00:16Z","Miscanthus × giganteus is a sterile triploid hybrid perennial grass that is asexually propagated through rhizome planting. The increasing desire to discover alternative energy sources has recently heightened interest in developing M. × giganteus as a biofuel due to, among other factors, its exceptionally large biomass yield. In this study, mRNA extractions from ten dissimilar M. × giganteus tissues were sequenced, generating over eighty-three million high-quality short paired-end reads. Reads were assembled into over sixty-one thousand contiguous sequences, creating a novel representation of the transcriptome for this prominent non-model organism. Active expression of the ESTs was subsequently analyzed by RNA-Seq on pre-existing Sorghum bicolor gene models in order to generate a series of expression profiles for the Miscanthus tissues sampled. This analysis aims to provide a means for the deeper understanding of M. × giganteus, with the hope that traits such as biomass accumulation, nutrient utilization, and tolerance of environmental stress can be more thoroughly identified and documented.","Item withdrawn by Mark Zulauf (zulauf@illinois.edu) on 2011-04-19T23:43:02Z Item was in collections: University of Illinois Theses & Dissertations (ID: 1) No. of bitstreams: 2 Barling_Adam.pdf.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5) Barling_Adam.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5)"]},{"key":"dc:title","label":"Title","values":["Assembly and analysis of the miscanthus × giganteus transcriptome"]}]}],"canonical_facts":{"dc:contributor":["Moose, Stephen P."],"dc:creator":["Barling, Adam R."],"dc:date":["2011-05-25T14:27:55Z","2013-05-26T10:00:16Z","2011-05"],"dc:description":["Made available in DSpace on 2011-05-25T14:27:55Z (GMT). No. of bitstreams: 2 Barling_Adam.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5) license.txt: 4061 bytes, checksum: 61fe40f251d63ab03773551d76de0942 (MD5)","Item marked as restricted to the 'Administrator' Group (id=1) by William Ingram (wingram2@illinois.edu) on 2011-05-25T14:29:38Z Item is restricted until 2013-05-25T14:29:35Z","Item reinstated by Sarah Shreeves (sshreeve@illinois.edu) on 2013-05-26T10:00:16Z Item was in collections: University of Illinois Dissertations and Theses (ID: 204) Theses and Dissertations - Crop Sciences (ID: 681) No. of bitstreams: 3 Barling_Adam.pdf.txt: 125383 bytes, checksum: 2a7d866396d8cfa220d6a9670eaa5de3 (MD5) Barling_Adam.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5) license.txt: 4061 bytes, checksum: 61fe40f251d63ab03773551d76de0942 (MD5)","Item released from any restrictions by Sarah Shreeves (sshreeve@illinois.edu) on 2013-05-26T10:00:16Z","Miscanthus × giganteus is a sterile triploid hybrid perennial grass that is asexually propagated through rhizome planting. The increasing desire to discover alternative energy sources has recently heightened interest in developing M. × giganteus as a biofuel due to, among other factors, its exceptionally large biomass yield. In this study, mRNA extractions from ten dissimilar M. × giganteus tissues were sequenced, generating over eighty-three million high-quality short paired-end reads. Reads were assembled into over sixty-one thousand contiguous sequences, creating a novel representation of the transcriptome for this prominent non-model organism. Active expression of the ESTs was subsequently analyzed by RNA-Seq on pre-existing Sorghum bicolor gene models in order to generate a series of expression profiles for the Miscanthus tissues sampled. This analysis aims to provide a means for the deeper understanding of M. × giganteus, with the hope that traits such as biomass accumulation, nutrient utilization, and tolerance of environmental stress can be more thoroughly identified and documented.","Item withdrawn by Mark Zulauf (zulauf@illinois.edu) on 2011-04-19T23:43:02Z Item was in collections: University of Illinois Theses & Dissertations (ID: 1) No. of bitstreams: 2 Barling_Adam.pdf.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5) Barling_Adam.pdf: 1699625 bytes, checksum: cedaa82b35a48883047793b6062fb184 (MD5)"],"dc:identifier":["http://hdl.handle.net/2142/24444"],"dc:language":["en"],"dc:rights":["Copyright 2011 Adam R. Barling"],"dc:subject":["Miscanthus","Transcriptome","Sequencing","Biofuel","Bioenergy"],"dc:title":["Assembly and analysis of the miscanthus × giganteus transcriptome"],"thesis:degree_discipline":["Crop Sciences"],"thesis:degree_level":["Thesis"],"thesis:degree_name":["M.S."],"thesis:institution_name":["University of Illinois at Urbana-Champaign"]},"updated_at":"2026-07-22T22:25:23Z"}