{"id":{"repo_id":"uiuc","oai_identifier":"oai:www.ideals.illinois.edu:2142/105179"},"canonical_url":"https://search.dev.ndltd.org/etd/uiuc/oai:www.ideals.illinois.edu:2142/105179","repository":{"repo_id":"uiuc","name":"University of Illinois - Urbana-Champaign","base_url":"https://www.ideals.illinois.edu/oai-pmh"},"display":{"title":"Studies of transcriptomic mechanism for sugarcane biomass production and aquaporin in pineapple","abstract":"In spite of the expansions of population and the climate problems associated with fossil fuel, petroleum, coal and nature gases are still the major energy sources for electricity production and transportation in our daily life. Developing biofuel from lingo-cellulosic biomass or byproduct from food processing industry is one possible solution that can help us develop sustainable energy sources without food safety concerns. Here we conducted a transcriptomic study on the transgressive segregation of the F2 population derived from a cross between Saccharum officinarum ‘LA Purple’ and Saccharum robustum ‘MOL5829’ to determine how hormone related genes and pathways are regulated in sugarcane with high biomass yield. We also studied the transcriptome of 5 tissue types for 5 Saccharum spontaneum accessions with variable chromosome numbers and ploidy levels, and revealed impacts of ploidy levels of genome on global gene expression and transcriptional mechanism of differences in autoploidy chromosomes numbers. Last but not least, we analyzed the transcriptomic data of different tissue types of domesticated pineapple F153 and its wild relative Ananas bracteatus CB5 to study the transcriptomic level mechanism of water regulation related aquaporin gene family and revealed the rhythm of aquaporin transcripts, which is possibly relevant to water use efficiency (WUE). These studies have helped us gain more insights of trancriptomic mechanisms of hormones, ploidy levels, and aquaporins in various potential biofuel feedstocks, and may be helpful for further improving their performances and properties.","abstract_html":"In spite of the expansions of population and the climate problems associated with fossil fuel, petroleum, coal and nature gases are still the major energy sources for electricity production and transportation in our daily life. Developing biofuel from lingo-cellulosic biomass or byproduct from food processing industry is one possible solution that can help us develop sustainable energy sources without food safety concerns. Here we conducted a transcriptomic study on the transgressive segregation of the F2 population derived from a cross between Saccharum officinarum ‘LA Purple’ and Saccharum robustum ‘MOL5829’ to determine how hormone related genes and pathways are regulated in sugarcane with high biomass yield. We also studied the transcriptome of 5 tissue types for 5 Saccharum spontaneum accessions with variable chromosome numbers and ploidy levels, and revealed impacts of ploidy levels of genome on global gene expression and transcriptional mechanism of differences in autoploidy chromosomes numbers. Last but not least, we analyzed the transcriptomic data of different tissue types of domesticated pineapple F153 and its wild relative Ananas bracteatus CB5 to study the transcriptomic level mechanism of water regulation related aquaporin gene family and revealed the rhythm of aquaporin transcripts, which is possibly relevant to water use efficiency (WUE). These studies have helped us gain more insights of trancriptomic mechanisms of hormones, ploidy levels, and aquaporins in various potential biofuel feedstocks, and may be helpful for further improving their performances and properties.","abstract_has_math":false,"creators":["Zhu, Fan"],"institution":"University of Illinois at Urbana-Champaign","degree_name":"Ph.D.","degree_level":"Dissertation","degree_discipline":"Plant Biology","degree_department":null,"school":null,"contributors":["Ming, Ray R.","Ort, Donald R.","Sacks, Erik J.","Jamann, Tiffany M."],"advisors":[],"committee_chairs":[],"committee_members":[],"year":2019,"date_issued":"2019-08-23T20:44:42Z","date_published":"2019-08-23T20:44:42Z","updated_at":"2026-07-22T22:24:44Z","subjects":["Bioenergy Genome Transcriptome"],"languages":["en"],"rights":["Copyright 2019 Fan Zhu"],"rights_urls":[],"identifier_entries":[]},"links":{"outbound_url":"http://hdl.handle.net/2142/105179","outbound_label":"Handle","outbound_source":"dc:identifier"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:contributor","label":"Contributor","values":["Ming, Ray R.","Ort, Donald R.","Sacks, Erik J.","Jamann, Tiffany M."]},{"key":"dc:creator","label":"Author","values":["Zhu, Fan"]}]},{"id":"academic_context","label":"Academic Context","entries":[{"key":"dc:date","label":"Dc Date","values":["2019-08-23T20:44:42Z","2021-08-24T09:15:24Z","2019-04-18","2019-05"]},{"key":"dc:type","label":"Dc Type","values":["text"]},{"key":"thesis:degree_discipline","label":"Discipline","values":["Plant Biology"]},{"key":"thesis:degree_level","label":"Degree Level","values":["Dissertation"]},{"key":"thesis:degree_name","label":"Degree Name","values":["Ph.D."]},{"key":"thesis:institution_name","label":"Thesis Institution Name","values":["University of Illinois at Urbana-Champaign"]}]},{"id":"subjects_keywords","label":"Subjects and Keywords","entries":[{"key":"dc:subject","label":"Dc Subject","values":["Bioenergy Genome Transcriptome"]}]},{"id":"language_rights","label":"Language and Rights","entries":[{"key":"dc:language","label":"Dc Language","values":["en"]},{"key":"dc:rights","label":"Dc Rights","values":["Copyright 2019 Fan Zhu"]}]},{"id":"identifiers","label":"Identifiers","entries":[{"key":"dc:identifier","label":"Identifier","values":["http://hdl.handle.net/2142/105179"]}]},{"id":"additional","label":"Additional Metadata","entries":[{"key":"dc:description","label":"Description","values":["In spite of the expansions of population and the climate problems associated with fossil fuel, petroleum, coal and nature gases are still the major energy sources for electricity production and transportation in our daily life. Developing biofuel from lingo-cellulosic biomass or byproduct from food processing industry is one possible solution that can help us develop sustainable energy sources without food safety concerns. Here we conducted a transcriptomic study on the transgressive segregation of the F2 population derived from a cross between Saccharum officinarum ‘LA Purple’ and Saccharum robustum ‘MOL5829’ to determine how hormone related genes and pathways are regulated in sugarcane with high biomass yield. We also studied the transcriptome of 5 tissue types for 5 Saccharum spontaneum accessions with variable chromosome numbers and ploidy levels, and revealed impacts of ploidy levels of genome on global gene expression and transcriptional mechanism of differences in autoploidy chromosomes numbers. Last but not least, we analyzed the transcriptomic data of different tissue types of domesticated pineapple F153 and its wild relative Ananas bracteatus CB5 to study the transcriptomic level mechanism of water regulation related aquaporin gene family and revealed the rhythm of aquaporin transcripts, which is possibly relevant to water use efficiency (WUE). These studies have helped us gain more insights of trancriptomic mechanisms of hormones, ploidy levels, and aquaporins in various potential biofuel feedstocks, and may be helpful for further improving their performances and properties.","Submission published under a 24 month embargo labeled 'Closed Access', the embargo will last until 2021-05-01","The student, Fan Zhu, accepted the attached license on 2019-04-11 at 10:18.","The student, Fan Zhu, submitted this Dissertation for approval on 2019-04-17 at 15:00.","This Dissertation was approved for publication on 2019-04-18 at 08:48.","DSpace SAF Submission Ingestion Package generated from Vireo submission #13560 on 2019-08-22 at 16:21:01","Made available in DSpace on 2019-08-23T20:44:42Z (GMT). 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Developing biofuel from lingo-cellulosic biomass or byproduct from food processing industry is one possible solution that can help us develop sustainable energy sources without food safety concerns. Here we conducted a transcriptomic study on the transgressive segregation of the F2 population derived from a cross between Saccharum officinarum ‘LA Purple’ and Saccharum robustum ‘MOL5829’ to determine how hormone related genes and pathways are regulated in sugarcane with high biomass yield. We also studied the transcriptome of 5 tissue types for 5 Saccharum spontaneum accessions with variable chromosome numbers and ploidy levels, and revealed impacts of ploidy levels of genome on global gene expression and transcriptional mechanism of differences in autoploidy chromosomes numbers. Last but not least, we analyzed the transcriptomic data of different tissue types of domesticated pineapple F153 and its wild relative Ananas bracteatus CB5 to study the transcriptomic level mechanism of water regulation related aquaporin gene family and revealed the rhythm of aquaporin transcripts, which is possibly relevant to water use efficiency (WUE). These studies have helped us gain more insights of trancriptomic mechanisms of hormones, ploidy levels, and aquaporins in various potential biofuel feedstocks, and may be helpful for further improving their performances and properties.","Submission published under a 24 month embargo labeled 'Closed Access', the embargo will last until 2021-05-01","The student, Fan Zhu, accepted the attached license on 2019-04-11 at 10:18.","The student, Fan Zhu, submitted this Dissertation for approval on 2019-04-17 at 15:00.","This Dissertation was approved for publication on 2019-04-18 at 08:48.","DSpace SAF Submission Ingestion Package generated from Vireo submission #13560 on 2019-08-22 at 16:21:01","Made available in DSpace on 2019-08-23T20:44:42Z (GMT). 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