Several species of the diatom genus Thalassiosira Cleve, were observed in freshwater phytoplankton samples collected from a fifty-two kilometer reach of the San Joaquin River in the vicinity of Stockton, California, USA. The study was conducted between the South Airport Way bridge near Vernalis and the Stockton Deep Water Ship Channel during fall and summer of both 2005 and 2006. The entire reach is freshwater habitat with the lower twenty-eight km strongly influenced by tidal flow reversals driven by the San Francisco Estuary. Ninety four whole water samples were collected from surface waters during the months of July, August, September and October in 2005 and the months of July and August in 2006. Six species of Thalassiosira were identified using scanning electron and light microscopy: T. weissjlogii (Grunow), T. gessneri Hustedt, T. lacustris (Grunow), T. visurgis (Grunow), T. decipiens (Grunow), and T. incerta (Makarova).
Of the species observed, only T. weissjlogii has been previously reported in the freshwater portion of the San Joaquin River. The other five species have been previously reported from sites in the San Joaquin- San Francisco Estuary characterized as brackish, suggesting they are distributed in waters of various salinities ranging from freshwater to brackish within the river and estuary.
","abstract_html":"<p>Several species of the diatom genus Thalassiosira Cleve, were observed in freshwater phytoplankton samples collected from a fifty-two kilometer reach of the San Joaquin River in the vicinity of Stockton, California, USA. The study was conducted between the South Airport Way bridge near Vernalis and the Stockton Deep Water Ship Channel during fall and summer of both 2005 and 2006. The entire reach is freshwater habitat with the lower twenty-eight km strongly influenced by tidal flow reversals driven by the San Francisco Estuary. Ninety four whole water samples were collected from surface waters during the months of July, August, September and October in 2005 and the months of July and August in 2006. Six species of Thalassiosira were identified using scanning electron and light microscopy: T. weissjlogii (Grunow), T. gessneri Hustedt, T. lacustris (Grunow), T. visurgis (Grunow), T. decipiens (Grunow), and T. incerta (Makarova).</p> <p>Of the species observed, only T. weissjlogii has been previously reported in the freshwater portion of the San Joaquin River. The other five species have been previously reported from sites in the San Joaquin- San Francisco Estuary characterized as brackish, suggesting they are distributed in waters of various salinities ranging from freshwater to brackish within the river and estuary.</p>","abstract_has_math":false,"creators":["Burr, Karen Lynne"],"institution":null,"degree_name":"Master of Science (M.S.)","degree_level":"Thesis - Pacific Access Restricted","degree_discipline":"Biological Sciences","degree_department":null,"school":null,"contributors":["Mark S. Brunell"],"advisors":[],"committee_chairs":[],"committee_members":[],"year":2009,"date_issued":"2009-01-01T08:00:00Z","date_published":"2009-01-01T08:00:00Z","updated_at":"2026-07-24T05:36:46Z","subjects":["Water quality California San Joaquin River","Diatoms Effect of water pollution on","San Joaquin River (Calif)","Life Sciences"],"languages":[],"rights":[],"rights_urls":["http://rightsstatements.org/vocab/InC/1.0/"],"identifier_entries":[]},"links":{"outbound_url":"https://scholarlycommons.pacific.edu/uop_etds/728","outbound_label":"Repository record","outbound_source":"dc:identifier"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:contributor","label":"Contributor","values":["Mark S. Brunell"]},{"key":"dc:creator","label":"Author","values":["Burr, Karen Lynne"]}]},{"id":"academic_context","label":"Academic Context","entries":[{"key":"dc:date.available","label":"Dc Date Available","values":["2018-06-29T08:49:47Z"]},{"key":"thesis:degree_discipline","label":"Discipline","values":["Biological Sciences"]},{"key":"thesis:degree_level","label":"Degree Level","values":["Thesis - Pacific Access Restricted"]},{"key":"thesis:degree_name","label":"Degree Name","values":["Master of Science (M.S.)"]}]},{"id":"subjects_keywords","label":"Subjects and Keywords","entries":[{"key":"dc:subject","label":"Dc Subject","values":["Water quality California San Joaquin River","Diatoms Effect of water pollution on","San Joaquin River (Calif)","Life Sciences"]}]},{"id":"language_rights","label":"Language and Rights","entries":[{"key":"dc:rights","label":"Dc Rights","values":["http://rightsstatements.org/vocab/InC/1.0/"]}]},{"id":"identifiers","label":"Identifiers","entries":[{"key":"dc:identifier","label":"Identifier","values":["https://scholarlycommons.pacific.edu/uop_etds/728"]}]},{"id":"additional","label":"Additional Metadata","entries":[{"key":"dc:description.abstract","label":"Abstract","values":["Several species of the diatom genus Thalassiosira Cleve, were observed in freshwater phytoplankton samples collected from a fifty-two kilometer reach of the San Joaquin River in the vicinity of Stockton, California, USA. The study was conducted between the South Airport Way bridge near Vernalis and the Stockton Deep Water Ship Channel during fall and summer of both 2005 and 2006. The entire reach is freshwater habitat with the lower twenty-eight km strongly influenced by tidal flow reversals driven by the San Francisco Estuary. Ninety four whole water samples were collected from surface waters during the months of July, August, September and October in 2005 and the months of July and August in 2006. Six species of Thalassiosira were identified using scanning electron and light microscopy: T. weissjlogii (Grunow), T. gessneri Hustedt, T. lacustris (Grunow), T. visurgis (Grunow), T. decipiens (Grunow), and T. incerta (Makarova).
Of the species observed, only T. weissjlogii has been previously reported in the freshwater portion of the San Joaquin River. The other five species have been previously reported from sites in the San Joaquin- San Francisco Estuary characterized as brackish, suggesting they are distributed in waters of various salinities ranging from freshwater to brackish within the river and estuary.
"]},{"key":"dc:source","label":"Dc Source","values":["84"]},{"key":"dc:title","label":"Title","values":["Diatoms of the genus thalassiosira from the tidal San Joaquin River, Stockton CA, USA"]}]}],"canonical_facts":{"dc:contributor":["Mark S. Brunell"],"dc:creator":["Burr, Karen Lynne"],"dc:date.available":["2018-06-29T08:49:47Z"],"dc:description.abstract":["Several species of the diatom genus Thalassiosira Cleve, were observed in freshwater phytoplankton samples collected from a fifty-two kilometer reach of the San Joaquin River in the vicinity of Stockton, California, USA. The study was conducted between the South Airport Way bridge near Vernalis and the Stockton Deep Water Ship Channel during fall and summer of both 2005 and 2006. The entire reach is freshwater habitat with the lower twenty-eight km strongly influenced by tidal flow reversals driven by the San Francisco Estuary. Ninety four whole water samples were collected from surface waters during the months of July, August, September and October in 2005 and the months of July and August in 2006. Six species of Thalassiosira were identified using scanning electron and light microscopy: T. weissjlogii (Grunow), T. gessneri Hustedt, T. lacustris (Grunow), T. visurgis (Grunow), T. decipiens (Grunow), and T. incerta (Makarova).
Of the species observed, only T. weissjlogii has been previously reported in the freshwater portion of the San Joaquin River. The other five species have been previously reported from sites in the San Joaquin- San Francisco Estuary characterized as brackish, suggesting they are distributed in waters of various salinities ranging from freshwater to brackish within the river and estuary.
"],"dc:identifier":["https://scholarlycommons.pacific.edu/uop_etds/728"],"dc:rights":["http://rightsstatements.org/vocab/InC/1.0/"],"dc:source":["84"],"dc:subject":["Water quality California San Joaquin River","Diatoms Effect of water pollution on","San Joaquin River (Calif)","Life Sciences"],"dc:title":["Diatoms of the genus thalassiosira from the tidal San Joaquin River, Stockton CA, USA"],"thesis:degree_discipline":["Biological Sciences"],"thesis:degree_level":["Thesis - Pacific Access Restricted"],"thesis:degree_name":["Master of Science (M.S.)"]},"updated_at":"2026-07-24T05:36:46Z"}