{"id":{"repo_id":"tenn-hsc","oai_identifier":"oai:dc.uthsc.edu:dissertations-1339"},"canonical_url":"https://search.dev.ndltd.org/etd/tenn-hsc/oai:dc.uthsc.edu:dissertations-1339","repository":{"repo_id":"tenn-hsc","name":"University of Tennessee Health Science Center","base_url":"https://dc.uthsc.edu/do/oai/"},"display":{"title":"ERG11-Mediated Azole Resistance in Candida albicans","abstract":"<p>Although many medically important <em>Candida</em> species are commensal to the gut or colonizers of the skin, these organisms have the propensity to cause disease in the event of a waning immune system. Clinical manifestations of infections with <em>Candida</em> species can range from superficial mucosal infections to deep organ involvement usually resulting from haematogenous spread of infection. Despite significant progress made in the management of patients with fungal infections, the emergence of antifungal resistant clinical isolates creates significant problem in regards to antifungal prophylaxis and empirical treatment strategies. Antifungal resistance is associated with high mortality rates and hefty medical costs. The azole-antifungal class has been the “work horse” of antifungal pharmacotherapy for the past 20 years defined by its efficacy against <em>Candida</em> species and paucity of side effects. As the only oral option available for systemic antifungal treatment, the azoles are the most suitable option for the long treatment periods sometimes required for antifungal prophylaxis and therapy. As the azoles are fungistatic to <em>Candida</em> species, the lengthy and repeated treatment courses have resulted in azole-resistant clinical isolates resulting in treatment failure and increased patient mortality.</p> <p><em>Candida albicans</em> is the most prevalent etiologic cause of fungal disease. High-level azole resistance in this species is a result of the interplay of several mechanisms of resistance. Overexpression of the efflux transporter genes <em>CDR1</em>, <em>CDR2</em>, and <em>MDR1</em> is a common mechanism of drug resistance in <em>C. albicans</em> and the majority of previous investigations pertained to defining mechanisms of transcriptional regulation of efflux transporters. Alternatively to efflux transport, point mutations in the <em>ERG11</em> gene, whose gene product is the target of azoles, result in reduced target binding affinity without precluding enzymatic function. In addition to point mutations, overexpression of <em>ERG11</em> has also been shown to decrease fluconazole susceptibility. <em>ERG11</em> gene amplification by chromosome 5 duplication or the presence of a chr5L isochromosome is known to contribute to azole resistance. Additionally, the zinc-cluster transcription factor <em>Upc2</em> has been shown to regulate the expression of <em>ERG11</em> and other genes involved in ergosterol biosynthesis.</p> <p>In a large group of clinical <em>C. albicans</em> isolates enriched for azole resistance, I created a transcriptional profile defining expression of genes known to cause azole resistance such as <em>ERG11</em>, <em>CDR1</em>, <em>CDR2</em> and <em>MDR1</em>. Not surprisingly, <em>CDR1</em> and <em>CDR2</em> overexpression was generally coordinately regulated and quite prevalent among these isolates. Of those isolates that did overexpress <em>MDR1</em>, even fewer isolates expressed <em>MDR1</em> to the levels previously observed in azoleresistant isolates. <em>ERG11</em> was found to be upregulated in almost three-fourths of the fluconazoleresistant isolates examined. This suggests that <em>ERG11</em> overexpression is a common contributor to fluconazole resistance in <em>C. albicans</em>. Among the <em>ERG11</em>-overexpressing isolates studied here, I repeatedly recovered eight distinct single-nucleotide substitutions in <em>UPC2</em>. Five of these substitutions in <em>UPC2</em> have not been described previously. Of the five novel mutations, four mutations resulted in increased ERG11 expression and increased resistance to fluconazole but to various degrees. Genome-wide transcriptional analysis was performed for the four strongest <em>Upc2</em> amino acid substitutions (A643V, G648D, G648S, and Y642F). Genes commonly upregulated by all four mutations included those involved in ergosterol biosynthesis, in oxidoreductase activity, the major facilitator efflux pump encoded by the <em>MDR1</em> gene, and the uncharacterized ATP binding cassette transporter <em>CDR11</em>. These findings demonstrate that gain-of-function mutations in <em>UPC2</em> are more prevalent among clinical isolates than previously thought and make a significant contribution to azole antifungal resistance, but the findings do not account for <em>ERG11</em> overexpression in all such isolates of <em>C. albicans</em>.</p> <p>Although prevalent, not all <em>ERG11</em>-overexpression in this group of isolates could be explained by GOF mutations in <em>Upc2</em>. In <em>C. albicans</em>, the Pho-G transcription factor <em>NDT80</em> has been implicated in azole resistance not only due to its regulation of <em>CDR1</em> but also due to its regulation of genes involved in the ergosterol biosynthesis pathway. In the next set of experiments, <em>NDT80</em> alleles for genetically matched pairs of isolates 945/1619 and 1002/3795 were sequenced. In both matched sets, the fluconazole resistant isolate overexpresses <em>ERG11</em>. Sequencing of the <em>NDT80</em> allele of both matched sets revealed several mutations that resulted in amino acid substitutions when compared to SC5314. This analysis also showed that a loss of heterozygostiy event occurs so that the resistant counterpart was homozygous for one allele. A strain carrying the <em>NDT80</em> allele derived from fluconazole-resistant isolate 1619 did not result in increased <em>ERG11</em> expression and increased fluconazole resistance. The mechanism by which <em>ERG11</em> is upregulated in the absence of <em>UPC2</em> gain-of-function mutations is currently under investigation. </p> <p>In addition to ERG11-overexpression, mutations in <em>ERG11</em> that result in amino acid substitutions in lanosterol demethylase have also been associated with decreased azole susceptibility. In the third study, I examined the prevalence and variance of <em>ERG11</em> mutations in the same group clinical <em>C. albicans</em> isolates. In this collection, I identified that 55 of the 63 isolated contained missense mutations in <em>ERG11</em> that resulted in at least one amino acid substitution. From this sequencing data, a selected a group of mutant <em>ERG11</em> alleles were expressed in an azole-susceptible background so I could determine the specific contribution of the mutant <em>ERG11</em> allele on antifungal susceptibility. In this analysis, I was particularly interested in characterizing amino acid substitutions that occurred alone and also when accompanied by another mutation. In total, I characterized ten <em>ERG11</em> alleles containing one amino acid substitution and nine alleles which carried <em>ERG11</em> alleles with a combination of amino acid substitutions. Fluconazole, itraconazole and voriconazole susceptibilities for these strains were tested. Our data demonstrated many of these mutations resulted in fluconazole resistance, but most were not as significant when tested against voriconazole or itraconazole. Itraconazole, in particular seemed less effected by <em>ERG11</em> mutations which produced significant resistance to fluconazole although amino acid combination Y132F and F145L resulted in increased itraconazole resistance. Specific combinations of <em>ERG11</em> mutations resulted in increased azole resistance beyond single mutations. These data suggest that structural differences between azole effect activity against specific mutant <em>ERG11</em> alleles.</p>","abstract_html":"&lt;p&gt;Although many medically important &lt;em&gt;Candida&lt;/em&gt; species are commensal to the gut or colonizers of the skin, these organisms have the propensity to cause disease in the event of a waning immune system. Clinical manifestations of infections with &lt;em&gt;Candida&lt;/em&gt; species can range from superficial mucosal infections to deep organ involvement usually resulting from haematogenous spread of infection. Despite significant progress made in the management of patients with fungal infections, the emergence of antifungal resistant clinical isolates creates significant problem in regards to antifungal prophylaxis and empirical treatment strategies. Antifungal resistance is associated with high mortality rates and hefty medical costs. The azole-antifungal class has been the “work horse” of antifungal pharmacotherapy for the past 20 years defined by its efficacy against &lt;em&gt;Candida&lt;/em&gt; species and paucity of side effects. As the only oral option available for systemic antifungal treatment, the azoles are the most suitable option for the long treatment periods sometimes required for antifungal prophylaxis and therapy. As the azoles are fungistatic to &lt;em&gt;Candida&lt;/em&gt; species, the lengthy and repeated treatment courses have resulted in azole-resistant clinical isolates resulting in treatment failure and increased patient mortality.&lt;/p&gt; &lt;p&gt;&lt;em&gt;Candida albicans&lt;/em&gt; is the most prevalent etiologic cause of fungal disease. High-level azole resistance in this species is a result of the interplay of several mechanisms of resistance. Overexpression of the efflux transporter genes &lt;em&gt;CDR1&lt;/em&gt;, &lt;em&gt;CDR2&lt;/em&gt;, and &lt;em&gt;MDR1&lt;/em&gt; is a common mechanism of drug resistance in &lt;em&gt;C. albicans&lt;/em&gt; and the majority of previous investigations pertained to defining mechanisms of transcriptional regulation of efflux transporters. Alternatively to efflux transport, point mutations in the &lt;em&gt;ERG11&lt;/em&gt; gene, whose gene product is the target of azoles, result in reduced target binding affinity without precluding enzymatic function. In addition to point mutations, overexpression of &lt;em&gt;ERG11&lt;/em&gt; has also been shown to decrease fluconazole susceptibility. &lt;em&gt;ERG11&lt;/em&gt; gene amplification by chromosome 5 duplication or the presence of a chr5L isochromosome is known to contribute to azole resistance. Additionally, the zinc-cluster transcription factor &lt;em&gt;Upc2&lt;/em&gt; has been shown to regulate the expression of &lt;em&gt;ERG11&lt;/em&gt; and other genes involved in ergosterol biosynthesis.&lt;/p&gt; &lt;p&gt;In a large group of clinical &lt;em&gt;C. albicans&lt;/em&gt; isolates enriched for azole resistance, I created a transcriptional profile defining expression of genes known to cause azole resistance such as &lt;em&gt;ERG11&lt;/em&gt;, &lt;em&gt;CDR1&lt;/em&gt;, &lt;em&gt;CDR2&lt;/em&gt; and &lt;em&gt;MDR1&lt;/em&gt;. Not surprisingly, &lt;em&gt;CDR1&lt;/em&gt; and &lt;em&gt;CDR2&lt;/em&gt; overexpression was generally coordinately regulated and quite prevalent among these isolates. Of those isolates that did overexpress &lt;em&gt;MDR1&lt;/em&gt;, even fewer isolates expressed &lt;em&gt;MDR1&lt;/em&gt; to the levels previously observed in azoleresistant isolates. &lt;em&gt;ERG11&lt;/em&gt; was found to be upregulated in almost three-fourths of the fluconazoleresistant isolates examined. This suggests that &lt;em&gt;ERG11&lt;/em&gt; overexpression is a common contributor to fluconazole resistance in &lt;em&gt;C. albicans&lt;/em&gt;. Among the &lt;em&gt;ERG11&lt;/em&gt;-overexpressing isolates studied here, I repeatedly recovered eight distinct single-nucleotide substitutions in &lt;em&gt;UPC2&lt;/em&gt;. Five of these substitutions in &lt;em&gt;UPC2&lt;/em&gt; have not been described previously. Of the five novel mutations, four mutations resulted in increased ERG11 expression and increased resistance to fluconazole but to various degrees. Genome-wide transcriptional analysis was performed for the four strongest &lt;em&gt;Upc2&lt;/em&gt; amino acid substitutions (A643V, G648D, G648S, and Y642F). Genes commonly upregulated by all four mutations included those involved in ergosterol biosynthesis, in oxidoreductase activity, the major facilitator efflux pump encoded by the &lt;em&gt;MDR1&lt;/em&gt; gene, and the uncharacterized ATP binding cassette transporter &lt;em&gt;CDR11&lt;/em&gt;. These findings demonstrate that gain-of-function mutations in &lt;em&gt;UPC2&lt;/em&gt; are more prevalent among clinical isolates than previously thought and make a significant contribution to azole antifungal resistance, but the findings do not account for &lt;em&gt;ERG11&lt;/em&gt; overexpression in all such isolates of &lt;em&gt;C. albicans&lt;/em&gt;.&lt;/p&gt; &lt;p&gt;Although prevalent, not all &lt;em&gt;ERG11&lt;/em&gt;-overexpression in this group of isolates could be explained by GOF mutations in &lt;em&gt;Upc2&lt;/em&gt;. In &lt;em&gt;C. albicans&lt;/em&gt;, the Pho-G transcription factor &lt;em&gt;NDT80&lt;/em&gt; has been implicated in azole resistance not only due to its regulation of &lt;em&gt;CDR1&lt;/em&gt; but also due to its regulation of genes involved in the ergosterol biosynthesis pathway. In the next set of experiments, &lt;em&gt;NDT80&lt;/em&gt; alleles for genetically matched pairs of isolates 945/1619 and 1002/3795 were sequenced. In both matched sets, the fluconazole resistant isolate overexpresses &lt;em&gt;ERG11&lt;/em&gt;. Sequencing of the &lt;em&gt;NDT80&lt;/em&gt; allele of both matched sets revealed several mutations that resulted in amino acid substitutions when compared to SC5314. This analysis also showed that a loss of heterozygostiy event occurs so that the resistant counterpart was homozygous for one allele. A strain carrying the &lt;em&gt;NDT80&lt;/em&gt; allele derived from fluconazole-resistant isolate 1619 did not result in increased &lt;em&gt;ERG11&lt;/em&gt; expression and increased fluconazole resistance. The mechanism by which &lt;em&gt;ERG11&lt;/em&gt; is upregulated in the absence of &lt;em&gt;UPC2&lt;/em&gt; gain-of-function mutations is currently under investigation. &lt;/p&gt; &lt;p&gt;In addition to ERG11-overexpression, mutations in &lt;em&gt;ERG11&lt;/em&gt; that result in amino acid substitutions in lanosterol demethylase have also been associated with decreased azole susceptibility. In the third study, I examined the prevalence and variance of &lt;em&gt;ERG11&lt;/em&gt; mutations in the same group clinical &lt;em&gt;C. albicans&lt;/em&gt; isolates. In this collection, I identified that 55 of the 63 isolated contained missense mutations in &lt;em&gt;ERG11&lt;/em&gt; that resulted in at least one amino acid substitution. From this sequencing data, a selected a group of mutant &lt;em&gt;ERG11&lt;/em&gt; alleles were expressed in an azole-susceptible background so I could determine the specific contribution of the mutant &lt;em&gt;ERG11&lt;/em&gt; allele on antifungal susceptibility. In this analysis, I was particularly interested in characterizing amino acid substitutions that occurred alone and also when accompanied by another mutation. In total, I characterized ten &lt;em&gt;ERG11&lt;/em&gt; alleles containing one amino acid substitution and nine alleles which carried &lt;em&gt;ERG11&lt;/em&gt; alleles with a combination of amino acid substitutions. Fluconazole, itraconazole and voriconazole susceptibilities for these strains were tested. Our data demonstrated many of these mutations resulted in fluconazole resistance, but most were not as significant when tested against voriconazole or itraconazole. Itraconazole, in particular seemed less effected by &lt;em&gt;ERG11&lt;/em&gt; mutations which produced significant resistance to fluconazole although amino acid combination Y132F and F145L resulted in increased itraconazole resistance. Specific combinations of &lt;em&gt;ERG11&lt;/em&gt; mutations resulted in increased azole resistance beyond single mutations. These data suggest that structural differences between azole effect activity against specific mutant &lt;em&gt;ERG11&lt;/em&gt; alleles.&lt;/p&gt;","abstract_has_math":false,"creators":["Flowers, Stephanie Ann"],"institution":null,"degree_name":"Doctor of Philosophy (PhD)","degree_level":"Dissertation","degree_discipline":"Biomedical Sciences","degree_department":null,"school":null,"contributors":["P. David Rogers, Pharm.D., Ph.D."],"advisors":[],"committee_chairs":[],"committee_members":[],"year":2013,"date_issued":"2013-12-01T08:00:00Z","date_published":"2013-12-01T08:00:00Z","updated_at":"2026-07-24T05:00:23Z","subjects":["albicans","azole","Candida","fluconazole","resistance","Bacterial Infections and Mycoses","Chemicals and Drugs","Diseases","Fungi","Medical Immunology","Medical Sciences","Medicinal and Pharmaceutical Chemistry","Medicine and Health Sciences","Organisms","Pharmaceutical Preparations","Pharmacy and Pharmaceutical Sciences"],"languages":[],"rights":[],"rights_urls":[],"identifier_entries":[]},"links":{"outbound_url":"https://dc.uthsc.edu/dissertations/335","outbound_label":"Repository record","outbound_source":"dc:identifier"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:contributor","label":"Contributor","values":["P. David Rogers, Pharm.D., Ph.D."]},{"key":"dc:creator","label":"Author","values":["Flowers, Stephanie Ann"]}]},{"id":"academic_context","label":"Academic Context","entries":[{"key":"dc:date.available","label":"Dc Date Available","values":["2016-06-21T07:00:00Z"]},{"key":"thesis:degree_discipline","label":"Discipline","values":["Biomedical Sciences"]},{"key":"thesis:degree_level","label":"Degree Level","values":["Dissertation"]},{"key":"thesis:degree_name","label":"Degree Name","values":["Doctor of Philosophy (PhD)"]}]},{"id":"subjects_keywords","label":"Subjects and Keywords","entries":[{"key":"dc:subject","label":"Dc Subject","values":["albicans","azole","Candida","fluconazole","resistance","Bacterial Infections and Mycoses","Chemicals and Drugs","Diseases","Fungi","Medical Immunology","Medical Sciences","Medicinal and Pharmaceutical Chemistry","Medicine and Health Sciences","Organisms","Pharmaceutical Preparations","Pharmacy and Pharmaceutical Sciences"]}]},{"id":"identifiers","label":"Identifiers","entries":[{"key":"dc:identifier","label":"Identifier","values":["https://dc.uthsc.edu/dissertations/335"]}]},{"id":"additional","label":"Additional Metadata","entries":[{"key":"dc:description.abstract","label":"Abstract","values":["<p>Although many medically important <em>Candida</em> species are commensal to the gut or colonizers of the skin, these organisms have the propensity to cause disease in the event of a waning immune system. Clinical manifestations of infections with <em>Candida</em> species can range from superficial mucosal infections to deep organ involvement usually resulting from haematogenous spread of infection. Despite significant progress made in the management of patients with fungal infections, the emergence of antifungal resistant clinical isolates creates significant problem in regards to antifungal prophylaxis and empirical treatment strategies. Antifungal resistance is associated with high mortality rates and hefty medical costs. The azole-antifungal class has been the “work horse” of antifungal pharmacotherapy for the past 20 years defined by its efficacy against <em>Candida</em> species and paucity of side effects. As the only oral option available for systemic antifungal treatment, the azoles are the most suitable option for the long treatment periods sometimes required for antifungal prophylaxis and therapy. As the azoles are fungistatic to <em>Candida</em> species, the lengthy and repeated treatment courses have resulted in azole-resistant clinical isolates resulting in treatment failure and increased patient mortality.</p> <p><em>Candida albicans</em> is the most prevalent etiologic cause of fungal disease. High-level azole resistance in this species is a result of the interplay of several mechanisms of resistance. Overexpression of the efflux transporter genes <em>CDR1</em>, <em>CDR2</em>, and <em>MDR1</em> is a common mechanism of drug resistance in <em>C. albicans</em> and the majority of previous investigations pertained to defining mechanisms of transcriptional regulation of efflux transporters. Alternatively to efflux transport, point mutations in the <em>ERG11</em> gene, whose gene product is the target of azoles, result in reduced target binding affinity without precluding enzymatic function. In addition to point mutations, overexpression of <em>ERG11</em> has also been shown to decrease fluconazole susceptibility. <em>ERG11</em> gene amplification by chromosome 5 duplication or the presence of a chr5L isochromosome is known to contribute to azole resistance. Additionally, the zinc-cluster transcription factor <em>Upc2</em> has been shown to regulate the expression of <em>ERG11</em> and other genes involved in ergosterol biosynthesis.</p> <p>In a large group of clinical <em>C. albicans</em> isolates enriched for azole resistance, I created a transcriptional profile defining expression of genes known to cause azole resistance such as <em>ERG11</em>, <em>CDR1</em>, <em>CDR2</em> and <em>MDR1</em>. Not surprisingly, <em>CDR1</em> and <em>CDR2</em> overexpression was generally coordinately regulated and quite prevalent among these isolates. Of those isolates that did overexpress <em>MDR1</em>, even fewer isolates expressed <em>MDR1</em> to the levels previously observed in azoleresistant isolates. <em>ERG11</em> was found to be upregulated in almost three-fourths of the fluconazoleresistant isolates examined. This suggests that <em>ERG11</em> overexpression is a common contributor to fluconazole resistance in <em>C. albicans</em>. Among the <em>ERG11</em>-overexpressing isolates studied here, I repeatedly recovered eight distinct single-nucleotide substitutions in <em>UPC2</em>. Five of these substitutions in <em>UPC2</em> have not been described previously. Of the five novel mutations, four mutations resulted in increased ERG11 expression and increased resistance to fluconazole but to various degrees. Genome-wide transcriptional analysis was performed for the four strongest <em>Upc2</em> amino acid substitutions (A643V, G648D, G648S, and Y642F). Genes commonly upregulated by all four mutations included those involved in ergosterol biosynthesis, in oxidoreductase activity, the major facilitator efflux pump encoded by the <em>MDR1</em> gene, and the uncharacterized ATP binding cassette transporter <em>CDR11</em>. These findings demonstrate that gain-of-function mutations in <em>UPC2</em> are more prevalent among clinical isolates than previously thought and make a significant contribution to azole antifungal resistance, but the findings do not account for <em>ERG11</em> overexpression in all such isolates of <em>C. albicans</em>.</p> <p>Although prevalent, not all <em>ERG11</em>-overexpression in this group of isolates could be explained by GOF mutations in <em>Upc2</em>. In <em>C. albicans</em>, the Pho-G transcription factor <em>NDT80</em> has been implicated in azole resistance not only due to its regulation of <em>CDR1</em> but also due to its regulation of genes involved in the ergosterol biosynthesis pathway. In the next set of experiments, <em>NDT80</em> alleles for genetically matched pairs of isolates 945/1619 and 1002/3795 were sequenced. In both matched sets, the fluconazole resistant isolate overexpresses <em>ERG11</em>. Sequencing of the <em>NDT80</em> allele of both matched sets revealed several mutations that resulted in amino acid substitutions when compared to SC5314. This analysis also showed that a loss of heterozygostiy event occurs so that the resistant counterpart was homozygous for one allele. A strain carrying the <em>NDT80</em> allele derived from fluconazole-resistant isolate 1619 did not result in increased <em>ERG11</em> expression and increased fluconazole resistance. The mechanism by which <em>ERG11</em> is upregulated in the absence of <em>UPC2</em> gain-of-function mutations is currently under investigation. </p> <p>In addition to ERG11-overexpression, mutations in <em>ERG11</em> that result in amino acid substitutions in lanosterol demethylase have also been associated with decreased azole susceptibility. In the third study, I examined the prevalence and variance of <em>ERG11</em> mutations in the same group clinical <em>C. albicans</em> isolates. In this collection, I identified that 55 of the 63 isolated contained missense mutations in <em>ERG11</em> that resulted in at least one amino acid substitution. From this sequencing data, a selected a group of mutant <em>ERG11</em> alleles were expressed in an azole-susceptible background so I could determine the specific contribution of the mutant <em>ERG11</em> allele on antifungal susceptibility. In this analysis, I was particularly interested in characterizing amino acid substitutions that occurred alone and also when accompanied by another mutation. In total, I characterized ten <em>ERG11</em> alleles containing one amino acid substitution and nine alleles which carried <em>ERG11</em> alleles with a combination of amino acid substitutions. Fluconazole, itraconazole and voriconazole susceptibilities for these strains were tested. Our data demonstrated many of these mutations resulted in fluconazole resistance, but most were not as significant when tested against voriconazole or itraconazole. Itraconazole, in particular seemed less effected by <em>ERG11</em> mutations which produced significant resistance to fluconazole although amino acid combination Y132F and F145L resulted in increased itraconazole resistance. Specific combinations of <em>ERG11</em> mutations resulted in increased azole resistance beyond single mutations. These data suggest that structural differences between azole effect activity against specific mutant <em>ERG11</em> alleles.</p>"]},{"key":"dc:title","label":"Title","values":["ERG11-Mediated Azole Resistance in Candida albicans"]}]}],"canonical_facts":{"dc:contributor":["P. David Rogers, Pharm.D., Ph.D."],"dc:creator":["Flowers, Stephanie Ann"],"dc:date.available":["2016-06-21T07:00:00Z"],"dc:description.abstract":["<p>Although many medically important <em>Candida</em> species are commensal to the gut or colonizers of the skin, these organisms have the propensity to cause disease in the event of a waning immune system. Clinical manifestations of infections with <em>Candida</em> species can range from superficial mucosal infections to deep organ involvement usually resulting from haematogenous spread of infection. Despite significant progress made in the management of patients with fungal infections, the emergence of antifungal resistant clinical isolates creates significant problem in regards to antifungal prophylaxis and empirical treatment strategies. Antifungal resistance is associated with high mortality rates and hefty medical costs. The azole-antifungal class has been the “work horse” of antifungal pharmacotherapy for the past 20 years defined by its efficacy against <em>Candida</em> species and paucity of side effects. As the only oral option available for systemic antifungal treatment, the azoles are the most suitable option for the long treatment periods sometimes required for antifungal prophylaxis and therapy. As the azoles are fungistatic to <em>Candida</em> species, the lengthy and repeated treatment courses have resulted in azole-resistant clinical isolates resulting in treatment failure and increased patient mortality.</p> <p><em>Candida albicans</em> is the most prevalent etiologic cause of fungal disease. High-level azole resistance in this species is a result of the interplay of several mechanisms of resistance. Overexpression of the efflux transporter genes <em>CDR1</em>, <em>CDR2</em>, and <em>MDR1</em> is a common mechanism of drug resistance in <em>C. albicans</em> and the majority of previous investigations pertained to defining mechanisms of transcriptional regulation of efflux transporters. Alternatively to efflux transport, point mutations in the <em>ERG11</em> gene, whose gene product is the target of azoles, result in reduced target binding affinity without precluding enzymatic function. In addition to point mutations, overexpression of <em>ERG11</em> has also been shown to decrease fluconazole susceptibility. <em>ERG11</em> gene amplification by chromosome 5 duplication or the presence of a chr5L isochromosome is known to contribute to azole resistance. Additionally, the zinc-cluster transcription factor <em>Upc2</em> has been shown to regulate the expression of <em>ERG11</em> and other genes involved in ergosterol biosynthesis.</p> <p>In a large group of clinical <em>C. albicans</em> isolates enriched for azole resistance, I created a transcriptional profile defining expression of genes known to cause azole resistance such as <em>ERG11</em>, <em>CDR1</em>, <em>CDR2</em> and <em>MDR1</em>. Not surprisingly, <em>CDR1</em> and <em>CDR2</em> overexpression was generally coordinately regulated and quite prevalent among these isolates. Of those isolates that did overexpress <em>MDR1</em>, even fewer isolates expressed <em>MDR1</em> to the levels previously observed in azoleresistant isolates. <em>ERG11</em> was found to be upregulated in almost three-fourths of the fluconazoleresistant isolates examined. This suggests that <em>ERG11</em> overexpression is a common contributor to fluconazole resistance in <em>C. albicans</em>. Among the <em>ERG11</em>-overexpressing isolates studied here, I repeatedly recovered eight distinct single-nucleotide substitutions in <em>UPC2</em>. Five of these substitutions in <em>UPC2</em> have not been described previously. Of the five novel mutations, four mutations resulted in increased ERG11 expression and increased resistance to fluconazole but to various degrees. Genome-wide transcriptional analysis was performed for the four strongest <em>Upc2</em> amino acid substitutions (A643V, G648D, G648S, and Y642F). Genes commonly upregulated by all four mutations included those involved in ergosterol biosynthesis, in oxidoreductase activity, the major facilitator efflux pump encoded by the <em>MDR1</em> gene, and the uncharacterized ATP binding cassette transporter <em>CDR11</em>. These findings demonstrate that gain-of-function mutations in <em>UPC2</em> are more prevalent among clinical isolates than previously thought and make a significant contribution to azole antifungal resistance, but the findings do not account for <em>ERG11</em> overexpression in all such isolates of <em>C. albicans</em>.</p> <p>Although prevalent, not all <em>ERG11</em>-overexpression in this group of isolates could be explained by GOF mutations in <em>Upc2</em>. In <em>C. albicans</em>, the Pho-G transcription factor <em>NDT80</em> has been implicated in azole resistance not only due to its regulation of <em>CDR1</em> but also due to its regulation of genes involved in the ergosterol biosynthesis pathway. In the next set of experiments, <em>NDT80</em> alleles for genetically matched pairs of isolates 945/1619 and 1002/3795 were sequenced. In both matched sets, the fluconazole resistant isolate overexpresses <em>ERG11</em>. Sequencing of the <em>NDT80</em> allele of both matched sets revealed several mutations that resulted in amino acid substitutions when compared to SC5314. This analysis also showed that a loss of heterozygostiy event occurs so that the resistant counterpart was homozygous for one allele. A strain carrying the <em>NDT80</em> allele derived from fluconazole-resistant isolate 1619 did not result in increased <em>ERG11</em> expression and increased fluconazole resistance. The mechanism by which <em>ERG11</em> is upregulated in the absence of <em>UPC2</em> gain-of-function mutations is currently under investigation. </p> <p>In addition to ERG11-overexpression, mutations in <em>ERG11</em> that result in amino acid substitutions in lanosterol demethylase have also been associated with decreased azole susceptibility. In the third study, I examined the prevalence and variance of <em>ERG11</em> mutations in the same group clinical <em>C. albicans</em> isolates. In this collection, I identified that 55 of the 63 isolated contained missense mutations in <em>ERG11</em> that resulted in at least one amino acid substitution. From this sequencing data, a selected a group of mutant <em>ERG11</em> alleles were expressed in an azole-susceptible background so I could determine the specific contribution of the mutant <em>ERG11</em> allele on antifungal susceptibility. In this analysis, I was particularly interested in characterizing amino acid substitutions that occurred alone and also when accompanied by another mutation. In total, I characterized ten <em>ERG11</em> alleles containing one amino acid substitution and nine alleles which carried <em>ERG11</em> alleles with a combination of amino acid substitutions. Fluconazole, itraconazole and voriconazole susceptibilities for these strains were tested. Our data demonstrated many of these mutations resulted in fluconazole resistance, but most were not as significant when tested against voriconazole or itraconazole. Itraconazole, in particular seemed less effected by <em>ERG11</em> mutations which produced significant resistance to fluconazole although amino acid combination Y132F and F145L resulted in increased itraconazole resistance. Specific combinations of <em>ERG11</em> mutations resulted in increased azole resistance beyond single mutations. These data suggest that structural differences between azole effect activity against specific mutant <em>ERG11</em> alleles.</p>"],"dc:identifier":["https://dc.uthsc.edu/dissertations/335"],"dc:subject":["albicans","azole","Candida","fluconazole","resistance","Bacterial Infections and Mycoses","Chemicals and Drugs","Diseases","Fungi","Medical Immunology","Medical Sciences","Medicinal and Pharmaceutical Chemistry","Medicine and Health Sciences","Organisms","Pharmaceutical Preparations","Pharmacy and Pharmaceutical Sciences"],"dc:title":["ERG11-Mediated Azole Resistance in Candida albicans"],"thesis:degree_discipline":["Biomedical Sciences"],"thesis:degree_level":["Dissertation"],"thesis:degree_name":["Doctor of Philosophy (PhD)"]},"updated_at":"2026-07-24T05:00:23Z"}