Analysis of Cancer Margins in Mass Spectrometry Images
type: CreativeWork
description: Computational analysis of metabolite activity surrounding a tumor border could enhance intraoperative tumor resection. One method to collect this data is mass spectrometry imaging, an analytical technique that can detect the patterns of metabolites within a sample and retain the spatial information. The patterns of metabolites can provide further insight into the functioning of cells. Our data included mass spectrometry images of excised tissue samples from patients who underwent the removal of skin and breast cancer. By applying computational analysis to a pathologist-defined tumor boundary, we compared patterns of metabolites to the physical annotations. We proposed a linear model that reconstructed mass spectrometry signals from the tumor boundary using only tumor and non-tumor signals. By creating a linear combination of both tumor and non-tumor signals, we could determine the type of metabolite activity surrounding the tumor boundary. We hypothesized a linear relationship between metabolite signals along the tumor border and between tumor and non-tumor regions. Our analysis strongly supported our hypothesis. The results suggested that the tumor stroma was a biologically active zone that extended past the pathologically annotated boundary in every sample.
abstract: Computational analysis of metabolite activity surrounding a tumor border could enhance intraoperative tumor resection. One method to collect this data is mass spectrometry imaging, an analytical technique that can detect the patterns of metabolites within a sample and retain the spatial information. The patterns of metabolites can provide further insight into the functioning of cells. Our data included mass spectrometry images of excised tissue samples from patients who underwent the removal of skin and breast cancer. By applying computational analysis to a pathologist-defined tumor boundary, we compared patterns of metabolites to the physical annotations. We proposed a linear model that reconstructed mass spectrometry signals from the tumor boundary using only tumor and non-tumor signals. By creating a linear combination of both tumor and non-tumor signals, we could determine the type of metabolite activity surrounding the tumor boundary. We hypothesized a linear relationship between metabolite signals along the tumor border and between tumor and non-tumor regions. Our analysis strongly supported our hypothesis. The results suggested that the tumor stroma was a biologically active zone that extended past the pathologically annotated boundary in every sample.
author: Katherine Williams
language: eng
keywords: Mass Spectrometry Imaging, Breast Cancer, Skin Cancer, Biomedical Computing, Tumor Stroma, Machine Learning, Computing
license: http://creativecommons.org/licenses/by-nc/4.0/
date published: 2024-08-28
date modified: 2026-07-27T20:35:41Z
provider: Queens University
publisher: Networked Digital Library of Theses and Dissertations
type: WebPage
source organization: Queens University

PropertyValue
property ID: Handle
value: https://hdl.handle.net/1974/33294