Retroactivity, modularity, and insulation in synthetic biology circuits

A central concept in synthetic biology is the reuse of well-characterized modules. Modularity simplifies circuit design by allowing for the decomposition of systems into separate modules for individual construction. Complex regulatory networks can be assembled from a library of devices. However, current devices in synthetic biology may not actually be modular and may instead change behavior upon interconnections, a phenomenon called retroactivity. Addition of a new component to a system can change individual device dynamics within the system, potentially making timeconsuming iterative redesign necessary. Another need for systems construction is the ability to rapidly assemble constructs from part libraries in a combinatorial, highthroughput fashion. In this thesis, a multi-site assembly method that permits the rapid reshuffling of promoters and genes for yeast expression is established. Synthetic circuits in yeast to measure retroactivity and to act as an insulator that attenuates such effect are designed and modeled.

Department dc:contributor.department

Massachusetts Institute of Technology. Dept. of Electrical Engineering and Computer Science.

Grantor dc:publisher

Massachusetts Institute of Technology

Year dc:date.issued

2011

Author dc:creator

• Lin, Allen

Advisor dc:contributor.advisor

• Ron Weiss and Domitilla Del Vecchio.

• Electrical Engineering and Computer Science.

Statement dc:rights

• M.I.T. theses are protected by copyright. They may be viewed from this source for any purpose, but reproduction or distribution in any format is prohibited without written permission. See provided URL for inquiries about permission.

Licence dc:rights.uri

• http://dspace.mit.edu/handle/1721.1/7582

Language dc:language.iso

eng

Handle dc:identifier.uri

http://hdl.handle.net/1721.1/76989

OAI identifier oai:identifier

oai:dspace.mit.edu:1721.1/76989