Micro free-flow isoelectric focusing

To unravel the complexity of cellular systems, protein prefractionation tools can be used to reduce cell lysate complexity and increase assay sensitivity. Rapid free flow isoelectric focusing (FF-IEF) is achieved in a microfluidic device by isolating the electrodes from the focusing region with porous buffer regions. Moving the electrodes enables the use of large electric fields without the detrimental effects of bubble formation in the focusing region of the device. The anode and cathode porous buffer regions, which are formed by acrylamide functionalized with immobilized pH groups, allow ion transport while providing buffering capacity. Thermo-electric cooling mitigates the effects of Joule heating on sample focusing at high field strengths (-500V/cm). This localized cooling was observed to increase device performance. Rapid focusing of low molecular weight isoelectric point markers proteins and protein complexes demonstrate the versatility of the technique. Simulations provide insight into and predict device performance based on a well-defined sample composition. This thesis also presents the first implementation of cascaded stages for a microfabricated free-flow isoelectric focusing device. Both analytical and computational models for IEF suggest device performance will be improved by utilizing multiple stages to reduce device residence time. These predictions are shown to be valid by using focusing of small IEF markers as a demonstration. We also show focusing of fluorescently tagged proteins under different channel geometries, with the most efficient focusing occurring in the cascaded design, as predicted by theory. An additional aim of this work is to demonstrate the compatibility of cascaded FF-IEF with common bioanalytical tools. As an example, outlet fractions from cascaded FF-IEF were analyzed by SDS-PAGE. Processing of whole cell lysate followed by immunoblotting for cell signaling markers demonstrates the reduction of albumin from samples, as well as the enrichment of apoptotic markers. Commercial FF-IEF equipment requires multiple inlets to approximate the linear pH gradient commonly used in IEF. These inlets require many premixed pH buffers and a dedicated pumping system, increasing system cost and complexity.

Department dc:contributor.department

Massachusetts Institute of Technology. Dept. of Chemical Engineering.

Grantor dc:publisher

Massachusetts Institute of Technology

Year dc:date.issued

2008

Author dc:creator

• Albrecht, Jacob William

Advisor dc:contributor.advisor

• Klavs F. Jensen.

• Chemical Engineering.

Statement dc:rights

• M.I.T. theses are protected by copyright. They may be viewed from this source for any purpose, but reproduction or distribution in any format is prohibited without written permission. See provided URL for inquiries about permission.

Licence dc:rights.uri

• http://dspace.mit.edu/handle/1721.1/7582

Language dc:language.iso

eng

Handle dc:identifier.uri

http://hdl.handle.net/1721.1/42435

OAI identifier oai:identifier

oai:dspace.mit.edu:1721.1/42435