{"id":{"repo_id":"mit","oai_identifier":"oai:dspace.mit.edu:1721.1/37073"},"canonical_url":"https://search.dev.ndltd.org/etd/mit/oai:dspace.mit.edu:1721.1/37073","repository":{"repo_id":"mit","name":"MIT","base_url":"https://dspace.mit.edu/oai/request"},"display":{"title":"Data visualization of biological microscopy image analyses","abstract":"The Open Microscopy Environment (OME) provides biologists with a framework to store, analyze and manipulate large sets of image data. Current microscopes are capable of generating large numbers of images and when coupled with automated analysis routines, researchers are able to generate intractable sets of data. I have developed an extension to the OME toolkit, named the LoViewer, which allows researchers to quickly identify clusters of images based on relationships between analytically measured parameters. By identifying unique subsets of data, researchers are able to make use of the rest of the OME client software to view interesting images in high resolution, classify them into category groups and apply further analysis routines. The design of the LoViewer itself and its integration with the rest of the OME toolkit will be discussed in detail in body of this thesis.","abstract_html":"The Open Microscopy Environment (OME) provides biologists with a framework to store, analyze and manipulate large sets of image data. Current microscopes are capable of generating large numbers of images and when coupled with automated analysis routines, researchers are able to generate intractable sets of data. I have developed an extension to the OME toolkit, named the LoViewer, which allows researchers to quickly identify clusters of images based on relationships between analytically measured parameters. By identifying unique subsets of data, researchers are able to make use of the rest of the OME client software to view interesting images in high resolution, classify them into category groups and apply further analysis routines. The design of the LoViewer itself and its integration with the rest of the OME toolkit will be discussed in detail in body of this thesis.","abstract_has_math":false,"creators":["Scelfo, Tony (Tony W.)"],"institution":"Massachusetts Institute of Technology","degree_name":null,"degree_level":null,"degree_discipline":null,"degree_department":"Massachusetts Institute of Technology. Dept. of Electrical Engineering and Computer Science.","school":null,"contributors":[],"advisors":["Peter Sorger."],"committee_chairs":[],"committee_members":[],"year":2006,"date_issued":"2006","date_published":"2006","updated_at":"2026-07-22T22:21:59Z","subjects":["Electrical Engineering and Computer Science."],"languages":["eng"],"rights":["M.I.T. theses are protected by copyright. They may be viewed from this source for any purpose, but reproduction or distribution in any format is prohibited without written permission. See provided URL for inquiries about permission."],"rights_urls":["http://dspace.mit.edu/handle/1721.1/7582"],"identifier_entries":[]},"links":{"outbound_url":"http://hdl.handle.net/1721.1/37073","outbound_label":"Handle","outbound_source":"dc:identifier.uri"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:contributor.advisor","label":"Advisor","values":["Peter Sorger."]},{"key":"dc:contributor.department","label":"Department","values":["Massachusetts Institute of Technology. Dept. of Electrical Engineering and Computer Science."]},{"key":"dc:contributor.other","label":"Dc Contributor Other","values":["Massachusetts Institute of Technology. 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