{"id":{"repo_id":"milano","oai_identifier":"oai:air.unimi.it:2434/962049"},"canonical_url":"https://search.dev.ndltd.org/etd/milano/oai:air.unimi.it:2434/962049","repository":{"repo_id":"milano","name":"Università degli Studi di Milano","base_url":"https://air.unimi.it/oai/request"},"display":{"title":"HETEROGENEITY OF LATENCY ESTABLISHMENT IN DIFFERENT HUMAN CD4+ T CELL SUBSETS STIMULATED WITH INTERLEUKIN-15","abstract":"The Human Immunodeficiency Virus (HIV) integrates its genome into the host DNA and persists for the lifetime of the infected cell. Even in the presence of an efficacious Highly Active Anti-Retroviral Therapy (HAART) treatment, a pool of latently infected cells persists and reactivates to produce viral particles if antiretroviral therapies are stopped or discontinued. This so-called latent reservoir is established mainly in CD4+ T memory ad naïve cells early during infection under conditions that are still not well defined. CD4+ T memory lymphocytes are highly heterogeneous and comprise both effector and long-lived subsets. This study aimed to analyze HIV latency establishment at the subset level in ex vivo primary CD4+ T cells stimulated with Interleukin-15 (IL-15) to mimic the pathophysiological conditions of the in vivo establishment during the early phases of infection. To do that, we used the dual-reporter virus HIV-GKO, which bears two different fluorescent reporters, one under the control of the HIV-LTR promoter and one under the control of a constitutive cellular promoter thus allowing the discrimination between transcriptionally silent infected cells and transcriptionally active infected cells. We demonstrated that HIV preferentially infects the more differentiated Central Memory (TCM), Transitional Memory (TTM) and Effector Memory (TEM) subsets. However, the less differentiated naïve and Stem-Cell Memory (TSCM) subsets were enriched in latency, suggesting that the rare infection of these compartments likely ends in a transcriptionally silent integrated provirus. This phenotype was independent of differential expression of the positive transcription elongation factor b (P-TEFb) components Cyclin T1 and phospho/Cyclin-dependent kinase 9 (P/CDK9). When we analyzed the cellular distribution of the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) transcription factor, which is important for HIV expression, we observed that nuclear levels of NF-κB were lower in naïve compared to the other memory subsets, thus partially explaining the higher propensity of this subset to harbor a 5 silent provirus. On the other hand, TSCM displayed NF-κB nuclear levels comparable to the other memory subsets, suggesting that other factors are responsible for the latency enrichment in this subset.","abstract_html":"The Human Immunodeficiency Virus (HIV) integrates its genome into the host DNA and persists for the lifetime of the infected cell. Even in the presence of an efficacious Highly Active Anti-Retroviral Therapy (HAART) treatment, a pool of latently infected cells persists and reactivates to produce viral particles if antiretroviral therapies are stopped or discontinued. This so-called latent reservoir is established mainly in CD4+ T memory ad naïve cells early during infection under conditions that are still not well defined. CD4+ T memory lymphocytes are highly heterogeneous and comprise both effector and long-lived subsets. This study aimed to analyze HIV latency establishment at the subset level in ex vivo primary CD4+ T cells stimulated with Interleukin-15 (IL-15) to mimic the pathophysiological conditions of the in vivo establishment during the early phases of infection. To do that, we used the dual-reporter virus HIV-GKO, which bears two different fluorescent reporters, one under the control of the HIV-LTR promoter and one under the control of a constitutive cellular promoter thus allowing the discrimination between transcriptionally silent infected cells and transcriptionally active infected cells. We demonstrated that HIV preferentially infects the more differentiated Central Memory (TCM), Transitional Memory (TTM) and Effector Memory (TEM) subsets. However, the less differentiated naïve and Stem-Cell Memory (TSCM) subsets were enriched in latency, suggesting that the rare infection of these compartments likely ends in a transcriptionally silent integrated provirus. This phenotype was independent of differential expression of the positive transcription elongation factor b (P-TEFb) components Cyclin T1 and phospho/Cyclin-dependent kinase 9 (P/CDK9). When we analyzed the cellular distribution of the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) transcription factor, which is important for HIV expression, we observed that nuclear levels of NF-κB were lower in naïve compared to the other memory subsets, thus partially explaining the higher propensity of this subset to harbor a 5 silent provirus. On the other hand, TSCM displayed NF-κB nuclear levels comparable to the other memory subsets, suggesting that other factors are responsible for the latency enrichment in this subset.","abstract_has_math":false,"creators":["BUTTA, GIACOMO MARIA"],"institution":"Università degli Studi di Milano","degree_name":null,"degree_level":null,"degree_discipline":null,"degree_department":null,"school":null,"contributors":["tutor: R. De Francesco ; phd co-tutor: L. Manganaro ; reviewer: M. Lusic","G. Alvisi ; phd coordinator: G. D. Norata","G.M. Butta","DE FRANCESCO, RAFFAELE","NORATA, GIUSEPPE DANILO"],"advisors":[],"committee_chairs":[],"committee_members":[],"year":2023,"date_issued":"2023-04-04","date_published":"2023-04-04","updated_at":"2026-07-27T20:19:12Z","subjects":["HIV","latent reservoir","IL-15","CD4","memory subsets","Settore BIO/19 - Microbiologia Generale"],"languages":["eng"],"rights":["info:eu-repo/semantics/openAccess"],"rights_urls":[],"identifier_entries":[{"key":"dc:identifier","label":"Identifier","values":["http://dx.doi.org/10.13130/butta-giacomo-maria_phd2023-04-04","10.13130/butta-giacomo-maria_phd2023-04-04"],"render_values":[{"text":"http://dx.doi.org/10.13130/butta-giacomo-maria_phd2023-04-04","href":"http://dx.doi.org/10.13130/butta-giacomo-maria_phd2023-04-04","code":true},{"text":"10.13130/butta-giacomo-maria_phd2023-04-04","href":"https://doi.org/10.13130/butta-giacomo-maria_phd2023-04-04","code":true}]}]},"links":{"outbound_url":"https://hdl.handle.net/2434/962049","outbound_label":"Handle","outbound_source":"dc:identifier"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:contributor","label":"Contributor","values":["tutor: R. De Francesco ; phd co-tutor: L. Manganaro ; reviewer: M. Lusic","G. Alvisi ; phd coordinator: G. D. Norata","G.M. Butta","DE FRANCESCO, RAFFAELE","NORATA, GIUSEPPE DANILO"]},{"key":"dc:creator","label":"Author","values":["BUTTA, GIACOMO MARIA"]}]},{"id":"academic_context","label":"Academic Context","entries":[{"key":"dc:date","label":"Dc Date","values":["2023-04-04"]},{"key":"dc:publisher","label":"Institution","values":["Università degli Studi di Milano"]},{"key":"dc:type","label":"Dc Type","values":["info:eu-repo/semantics/doctoralThesis"]}]},{"id":"subjects_keywords","label":"Subjects and Keywords","entries":[{"key":"dc:subject","label":"Dc Subject","values":["HIV","latent reservoir","IL-15","CD4","memory subsets","Settore BIO/19 - Microbiologia Generale"]}]},{"id":"language_rights","label":"Language and Rights","entries":[{"key":"dc:language","label":"Dc Language","values":["eng"]},{"key":"dc:rights","label":"Dc Rights","values":["info:eu-repo/semantics/openAccess"]}]},{"id":"identifiers","label":"Identifiers","entries":[{"key":"dc:identifier","label":"Identifier","values":["https://hdl.handle.net/2434/962049","http://dx.doi.org/10.13130/butta-giacomo-maria_phd2023-04-04","10.13130/butta-giacomo-maria_phd2023-04-04"]}]},{"id":"additional","label":"Additional Metadata","entries":[{"key":"dc:description","label":"Description","values":["The Human Immunodeficiency Virus (HIV) integrates its genome into the host DNA and persists for the lifetime of the infected cell. Even in the presence of an efficacious Highly Active Anti-Retroviral Therapy (HAART) treatment, a pool of latently infected cells persists and reactivates to produce viral particles if antiretroviral therapies are stopped or discontinued. This so-called latent reservoir is established mainly in CD4+ T memory ad naïve cells early during infection under conditions that are still not well defined. CD4+ T memory lymphocytes are highly heterogeneous and comprise both effector and long-lived subsets. This study aimed to analyze HIV latency establishment at the subset level in ex vivo primary CD4+ T cells stimulated with Interleukin-15 (IL-15) to mimic the pathophysiological conditions of the in vivo establishment during the early phases of infection. To do that, we used the dual-reporter virus HIV-GKO, which bears two different fluorescent reporters, one under the control of the HIV-LTR promoter and one under the control of a constitutive cellular promoter thus allowing the discrimination between transcriptionally silent infected cells and transcriptionally active infected cells. We demonstrated that HIV preferentially infects the more differentiated Central Memory (TCM), Transitional Memory (TTM) and Effector Memory (TEM) subsets. However, the less differentiated naïve and Stem-Cell Memory (TSCM) subsets were enriched in latency, suggesting that the rare infection of these compartments likely ends in a transcriptionally silent integrated provirus. This phenotype was independent of differential expression of the positive transcription elongation factor b (P-TEFb) components Cyclin T1 and phospho/Cyclin-dependent kinase 9 (P/CDK9). When we analyzed the cellular distribution of the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) transcription factor, which is important for HIV expression, we observed that nuclear levels of NF-κB were lower in naïve compared to the other memory subsets, thus partially explaining the higher propensity of this subset to harbor a 5 silent provirus. On the other hand, TSCM displayed NF-κB nuclear levels comparable to the other memory subsets, suggesting that other factors are responsible for the latency enrichment in this subset."]},{"key":"dc:title","label":"Title","values":["HETEROGENEITY OF LATENCY ESTABLISHMENT IN DIFFERENT HUMAN CD4+ T CELL SUBSETS STIMULATED WITH INTERLEUKIN-15"]}]}],"canonical_facts":{"dc:contributor":["tutor: R. De Francesco ; phd co-tutor: L. Manganaro ; reviewer: M. Lusic","G. Alvisi ; phd coordinator: G. D. Norata","G.M. Butta","DE FRANCESCO, RAFFAELE","NORATA, GIUSEPPE DANILO"],"dc:creator":["BUTTA, GIACOMO MARIA"],"dc:date":["2023-04-04"],"dc:description":["The Human Immunodeficiency Virus (HIV) integrates its genome into the host DNA and persists for the lifetime of the infected cell. Even in the presence of an efficacious Highly Active Anti-Retroviral Therapy (HAART) treatment, a pool of latently infected cells persists and reactivates to produce viral particles if antiretroviral therapies are stopped or discontinued. This so-called latent reservoir is established mainly in CD4+ T memory ad naïve cells early during infection under conditions that are still not well defined. CD4+ T memory lymphocytes are highly heterogeneous and comprise both effector and long-lived subsets. This study aimed to analyze HIV latency establishment at the subset level in ex vivo primary CD4+ T cells stimulated with Interleukin-15 (IL-15) to mimic the pathophysiological conditions of the in vivo establishment during the early phases of infection. To do that, we used the dual-reporter virus HIV-GKO, which bears two different fluorescent reporters, one under the control of the HIV-LTR promoter and one under the control of a constitutive cellular promoter thus allowing the discrimination between transcriptionally silent infected cells and transcriptionally active infected cells. We demonstrated that HIV preferentially infects the more differentiated Central Memory (TCM), Transitional Memory (TTM) and Effector Memory (TEM) subsets. However, the less differentiated naïve and Stem-Cell Memory (TSCM) subsets were enriched in latency, suggesting that the rare infection of these compartments likely ends in a transcriptionally silent integrated provirus. This phenotype was independent of differential expression of the positive transcription elongation factor b (P-TEFb) components Cyclin T1 and phospho/Cyclin-dependent kinase 9 (P/CDK9). When we analyzed the cellular distribution of the nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) transcription factor, which is important for HIV expression, we observed that nuclear levels of NF-κB were lower in naïve compared to the other memory subsets, thus partially explaining the higher propensity of this subset to harbor a 5 silent provirus. On the other hand, TSCM displayed NF-κB nuclear levels comparable to the other memory subsets, suggesting that other factors are responsible for the latency enrichment in this subset."],"dc:identifier":["https://hdl.handle.net/2434/962049","http://dx.doi.org/10.13130/butta-giacomo-maria_phd2023-04-04","10.13130/butta-giacomo-maria_phd2023-04-04"],"dc:language":["eng"],"dc:publisher":["Università degli Studi di Milano"],"dc:rights":["info:eu-repo/semantics/openAccess"],"dc:subject":["HIV","latent reservoir","IL-15","CD4","memory subsets","Settore BIO/19 - Microbiologia Generale"],"dc:title":["HETEROGENEITY OF LATENCY ESTABLISHMENT IN DIFFERENT HUMAN CD4+ T CELL SUBSETS STIMULATED WITH INTERLEUKIN-15"],"dc:type":["info:eu-repo/semantics/doctoralThesis"]},"updated_at":"2026-07-27T20:19:12Z"}