A “Neighborhood” Approach for Using Remotely Sensed Data to Post-Process Species Distribution Models for Conservation Assessments
type: CreativeWork
description: Species distribution models can be used to predict environmental suitability, estimate changes in species’ geographic ranges, and support conservation assessments. Masking suitability maps built from these models to remove areas currently lacking appropriate vegetation can refine predictions and aid conservation applications. However, the uncertainty around coordinates (even for recent records) can exceed the fine resolution of the additional data. Here, I present a novel yet simple methodological approach to reflect this reality of coordinate uncertainty of occurrence records and mismatch between climatic and habitat data resolution. I implement it for a forest-dwelling species currently considered threatened by the IUCN (Handleyomys chapmani). After building a Maxent species distribution model indicating climatically suitable areas, I determined deforestation tolerance thresholds (the lowest value of forest cover where the species has been observed recently) using two methods based on matching recent records with forest-cover data for the corresponding year: 1) extracting the exact pixel value where a record fell; and 2) using an aggregate measure of that and surrounding pixels (the “neighborhood” more likely within the radius of actual sampling that yielded the record). I applied the respective thresholds to mask the suitability prediction for H. chapmani, identifying areas of inferred habitat loss due to insufficient forest cover. For each method, from the post-processed map and records of the species, I calculated extent of occurrence (EOO) and area of occupancy (AOO), two metrics used by the IUCN for threat level categorization. The post-processing method had little effect on EOO estimates due to loss mostly within the range and not along the spatial margins, but for each method there was a vast difference when calculating EOO from occurrences versus from masked suitability maps. For AOO, the neighborhood method reduced the estimated values somewhat compared w…
abstract: Species distribution models can be used to predict environmental suitability, estimate changes in species’ geographic ranges, and support conservation assessments. Masking suitability maps built from these models to remove areas currently lacking appropriate vegetation can refine predictions and aid conservation applications. However, the uncertainty around coordinates (even for recent records) can exceed the fine resolution of the additional data. Here, I present a novel yet simple methodological approach to reflect this reality of coordinate uncertainty of occurrence records and mismatch between climatic and habitat data resolution. I implement it for a forest-dwelling species currently considered threatened by the IUCN (Handleyomys chapmani). After building a Maxent species distribution model indicating climatically suitable areas, I determined deforestation tolerance thresholds (the lowest value of forest cover where the species has been observed recently) using two methods based on matching recent records with forest-cover data for the corresponding year: 1) extracting the exact pixel value where a record fell; and 2) using an aggregate measure of that and surrounding pixels (the “neighborhood” more likely within the radius of actual sampling that yielded the record). I applied the respective thresholds to mask the suitability prediction for H. chapmani, identifying areas of inferred habitat loss due to insufficient forest cover. For each method, from the post-processed map and records of the species, I calculated extent of occurrence (EOO) and area of occupancy (AOO), two metrics used by the IUCN for threat level categorization. The post-processing method had little effect on EOO estimates due to loss mostly within the range and not along the spatial margins, but for each method there was a vast difference when calculating EOO from occurrences versus from masked suitability maps. For AOO, the neighborhood method reduced the estimated values somewhat compared w…
author: Johnson, Bethany A.
keywords: species distribution modeling, conservation, IUCN, redlisting, Maxent, Handleyomys, Environmental Sciences
date published: 2023-01-01T08:00:00Z
date modified: 2026-07-24T01:57:59Z
provider: City University of New York - City College
publisher: Networked Digital Library of Theses and Dissertations
type: WebPage
source organization: City University of New York - City College