Evolution of Toxin Resistance in the Grasshopper Mouse: A Comparative Genomics Perspective
type: CreativeWork
description: Novel traits enable many rodents to thrive in extreme environmental niches. For example, predatory grasshopper mice have co-evolved resistance to painful and lethal neurotoxins produced by their scorpion prey. Interestingly, toxin resistance in the three species of grasshopper mice (Onychomys torridus, Onychomys leucogaster, and Onychomys arenicola) varies; Onychomys torridus exhibits the highest resistance and Onychomys leucogaster the least. Grasshopper mice also feed on pinacate beetles, whose toxic sprays irritate the eyes and nasal tissues of predators. It has been reported that the grasshopper mice have structural and functional modifications in the sodium channel Nav1.8 that decrease the effect of the toxins. This raises interesting questions: What are the molecular adaptations underlying toxin resistance in Onychomys? What genes contribute to pain and toxin response? Which sodium and potassium channels are involved? To address these questions, I followed a comparative genomics approach. I produced the first high-quality reference genomes and annotations for Onychomys species and Peromyscus eremicus (a closely related outgroup). I implemented a comprehensive pipeline to detect positive selection across genome-scale datasets and identified a promising candidate gene for pain resistance in Onychomys: Nav1.3 (Scn3a). This sodium channel gene is expressed in the central nervous system and plays an important role in nociceptive signalling. I also detected that in O. torridus, the Foxe3 gene is positively selected, which is involved in the formation and maintenance of the eye lens. Given that their eyes are continuously exposed to toxins, selection on this gene may contribute to enhanced protection or repair of eye tissue. Additionally, I detected an Onychomys-specific tandem gene duplication of the Cblif gene, which encodes a glycoprotein crucial for vitamin B12 absorption. This adaptation likely supports the species' dietary specialisation and modified stomach mo…
abstract: Novel traits enable many rodents to thrive in extreme environmental niches. For example, predatory grasshopper mice have co-evolved resistance to painful and lethal neurotoxins produced by their scorpion prey. Interestingly, toxin resistance in the three species of grasshopper mice (Onychomys torridus, Onychomys leucogaster, and Onychomys arenicola) varies; Onychomys torridus exhibits the highest resistance and Onychomys leucogaster the least. Grasshopper mice also feed on pinacate beetles, whose toxic sprays irritate the eyes and nasal tissues of predators. It has been reported that the grasshopper mice have structural and functional modifications in the sodium channel Nav1.8 that decrease the effect of the toxins. This raises interesting questions: What are the molecular adaptations underlying toxin resistance in Onychomys? What genes contribute to pain and toxin response? Which sodium and potassium channels are involved? To address these questions, I followed a comparative genomics approach. I produced the first high-quality reference genomes and annotations for Onychomys species and Peromyscus eremicus (a closely related outgroup). I implemented a comprehensive pipeline to detect positive selection across genome-scale datasets and identified a promising candidate gene for pain resistance in Onychomys: Nav1.3 (Scn3a). This sodium channel gene is expressed in the central nervous system and plays an important role in nociceptive signalling. I also detected that in O. torridus, the Foxe3 gene is positively selected, which is involved in the formation and maintenance of the eye lens. Given that their eyes are continuously exposed to toxins, selection on this gene may contribute to enhanced protection or repair of eye tissue. Additionally, I detected an Onychomys-specific tandem gene duplication of the Cblif gene, which encodes a glycoprotein crucial for vitamin B12 absorption. This adaptation likely supports the species' dietary specialisation and modified stomach mo…
author: Pérez Calles, Claudia
language: eng
keywords: Onychomys torridus, comparative genomics, pangenome, mouse genomes, genomic variation, Peromyscus eremicus
license: https://www.repository.cam.ac.uk/bitstreams/6c7d2031-09f0-46e9-b9f8-7d864d474f6a/download
license: http://purl.org/NET/rdflicense/allrightsreserved
date published: 2025-09-30
date modified: 2026-07-22T22:24:18Z
provider: Cambridge University
publisher: Networked Digital Library of Theses and Dissertations
type: WebPage
source organization: University of Cambridge

PropertyValue
property ID: DOI
value: 10.17863/CAM.125038