{"id":{"repo_id":"cambridge","oai_identifier":"oai:www.repository.cam.ac.uk:1810/367720"},"canonical_url":"https://search.dev.ndltd.org/etd/cambridge/oai:www.repository.cam.ac.uk:1810/367720","repository":{"repo_id":"cambridge","name":"Cambridge University","base_url":"https://api.repository.cam.ac.uk/server/oai/request"},"display":{"title":"Hardware developments to improve image quality for cryoEM of biological specimens","abstract":"Several advances in cryoEM hardware have been integral in transforming the technique into a standard technique for high-resolution macromolecular structure determination. We are now entering an era where we can experimentally determine or predict the structure of almost the entire proteome. Efforts are naturally moving from solving purified structures to visualising macromolecules inside cells. However, because these specimens are an order of magnitude thicker than purified specimens, cryoEM inside cells is restricted to large complexes, such as ribosomes. Here, I investigate the use of two hardware developments, liquid helium cooling of the specimen during imaging and chromatic aberration (*C<sub>c</sub>*) correction, to improve the quality of cryoEM images, the latter in particular for thick specimens. I demonstrate that *C<sub>c</sub>* correction can be used to correctly focus inelastically scattered electrons, enhancing the signal significantly for thick specimens. I also demonstrate that reducing the specimen temperature from 81 K to 13 K reduces the rate of radiation damage in single-particle cryoEM, and I present progress in understanding other changes that occur when irradiating specimens at these temperatures. Lastly, I calculate the impact that these hardware developments could have on the minimum molecular mass of protein that we can visualise *in situ* by cryoEM. Taken together with other hardware and software developments, these technologies could dramatically alter the landscape of *in situ* cryoEM, with proteins as small as 100 kDa potentially being within reach.","abstract_html":"Several advances in cryoEM hardware have been integral in transforming the technique into a standard technique for high-resolution macromolecular structure determination. We are now entering an era where we can experimentally determine or predict the structure of almost the entire proteome. Efforts are naturally moving from solving purified structures to visualising macromolecules inside cells. However, because these specimens are an order of magnitude thicker than purified specimens, cryoEM inside cells is restricted to large complexes, such as ribosomes. Here, I investigate the use of two hardware developments, liquid helium cooling of the specimen during imaging and chromatic aberration (*C&lt;sub&gt;c&lt;/sub&gt;*) correction, to improve the quality of cryoEM images, the latter in particular for thick specimens. I demonstrate that *C&lt;sub&gt;c&lt;/sub&gt;* correction can be used to correctly focus inelastically scattered electrons, enhancing the signal significantly for thick specimens. I also demonstrate that reducing the specimen temperature from 81 K to 13 K reduces the rate of radiation damage in single-particle cryoEM, and I present progress in understanding other changes that occur when irradiating specimens at these temperatures. Lastly, I calculate the impact that these hardware developments could have on the minimum molecular mass of protein that we can visualise *in situ* by cryoEM. Taken together with other hardware and software developments, these technologies could dramatically alter the landscape of *in situ* cryoEM, with proteins as small as 100 kDa potentially being within reach.","abstract_has_math":false,"creators":["Dickerson, Joshua"],"institution":"University of Cambridge","degree_name":"Doctor of Philosophy (PhD)","degree_level":"Doctoral","degree_discipline":null,"degree_department":null,"school":null,"contributors":[],"advisors":["Russo, Christopher"],"committee_chairs":[],"committee_members":[],"year":2023,"date_issued":"2023-12-17","date_published":"2023-12-17","updated_at":"2026-07-22T22:24:10Z","subjects":["Cc correction","cryoEM","Liquid Helium","Radiation Damage","Structural Biology","TEM"],"languages":["eng"],"rights":[],"rights_urls":["https://apollo8-f-pro.lib.cam.ac.uk/bitstreams/8318a90d-22fa-4706-840c-0cba7558eb19/download","https://www.rioxx.net/licenses/all-rights-reserved/"],"identifier_entries":[]},"links":{"outbound_url":"https://doi.org/10.17863/CAM.108196","outbound_label":"DOI","outbound_source":"dc:identifier.doi"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:contributor.advisor","label":"Advisor","values":["Russo, Christopher"]},{"key":"dc:creator","label":"Author","values":["Dickerson, Joshua"]}]},{"id":"academic_context","label":"Academic Context","entries":[{"key":"dc:date.issued","label":"Date","values":["2023-12-17"]},{"key":"dc:publisher.institution","label":"Dc Publisher Institution","values":["University of Cambridge"]},{"key":"dc:relation.isreferencedby.uri","label":"Dc Relation Isreferencedby URI","values":["https://www.repository.cam.ac.uk/handle/1810/367720"]},{"key":"dc:type","label":"Dc Type","values":["Thesis"]},{"key":"dc:type.qualificationlevel","label":"Dc Type Qualificationlevel","values":["Doctoral"]},{"key":"dc:type.qualificationname","label":"Dc Type Qualificationname","values":["Doctor of Philosophy (PhD)"]}]},{"id":"subjects_keywords","label":"Subjects and Keywords","entries":[{"key":"dc:subject","label":"Dc Subject","values":["Cc correction","cryoEM","Liquid Helium","Radiation Damage","Structural Biology","TEM"]}]},{"id":"language_rights","label":"Language and Rights","entries":[{"key":"dc:language","label":"Dc Language","values":["eng"]},{"key":"dc:rights","label":"Dc Rights","values":["https://apollo8-f-pro.lib.cam.ac.uk/bitstreams/8318a90d-22fa-4706-840c-0cba7558eb19/download","https://www.rioxx.net/licenses/all-rights-reserved/"]}]},{"id":"identifiers","label":"Identifiers","entries":[{"key":"dc:identifier.doi","label":"DOI","values":["https://doi.org/10.17863/CAM.108196"]},{"key":"dc:identifier.uri","label":"Identifier URI","values":["https://apollo8-f-pro.lib.cam.ac.uk/bitstreams/1b963423-f3c8-4012-b450-a87598c800db/download"]}]},{"id":"additional","label":"Additional Metadata","entries":[{"key":"dc:description.abstract","label":"Abstract","values":["Several advances in cryoEM hardware have been integral in transforming the technique into a standard technique for high-resolution macromolecular structure determination. We are now entering an era where we can experimentally determine or predict the structure of almost the entire proteome. Efforts are naturally moving from solving purified structures to visualising macromolecules inside cells. However, because these specimens are an order of magnitude thicker than purified specimens, cryoEM inside cells is restricted to large complexes, such as ribosomes. Here, I investigate the use of two hardware developments, liquid helium cooling of the specimen during imaging and chromatic aberration (*C<sub>c</sub>*) correction, to improve the quality of cryoEM images, the latter in particular for thick specimens. I demonstrate that *C<sub>c</sub>* correction can be used to correctly focus inelastically scattered electrons, enhancing the signal significantly for thick specimens. I also demonstrate that reducing the specimen temperature from 81 K to 13 K reduces the rate of radiation damage in single-particle cryoEM, and I present progress in understanding other changes that occur when irradiating specimens at these temperatures. Lastly, I calculate the impact that these hardware developments could have on the minimum molecular mass of protein that we can visualise *in situ* by cryoEM. Taken together with other hardware and software developments, these technologies could dramatically alter the landscape of *in situ* cryoEM, with proteins as small as 100 kDa potentially being within reach."]},{"key":"dc:format.checksum.md5","label":"Dc Format Checksum Md5","values":["7b15632c76f0e8dd90e1f31a3828fe70","87eda9de84448d1f82354d60eee3eb5f"]},{"key":"dc:title","label":"Title","values":["Hardware developments to improve image quality for cryoEM of biological specimens"]}]}],"canonical_facts":{"dc:contributor.advisor":["Russo, Christopher"],"dc:creator":["Dickerson, Joshua"],"dc:date.issued":["2023-12-17"],"dc:description.abstract":["Several advances in cryoEM hardware have been integral in transforming the technique into a standard technique for high-resolution macromolecular structure determination. We are now entering an era where we can experimentally determine or predict the structure of almost the entire proteome. Efforts are naturally moving from solving purified structures to visualising macromolecules inside cells. However, because these specimens are an order of magnitude thicker than purified specimens, cryoEM inside cells is restricted to large complexes, such as ribosomes. Here, I investigate the use of two hardware developments, liquid helium cooling of the specimen during imaging and chromatic aberration (*C<sub>c</sub>*) correction, to improve the quality of cryoEM images, the latter in particular for thick specimens. I demonstrate that *C<sub>c</sub>* correction can be used to correctly focus inelastically scattered electrons, enhancing the signal significantly for thick specimens. I also demonstrate that reducing the specimen temperature from 81 K to 13 K reduces the rate of radiation damage in single-particle cryoEM, and I present progress in understanding other changes that occur when irradiating specimens at these temperatures. Lastly, I calculate the impact that these hardware developments could have on the minimum molecular mass of protein that we can visualise *in situ* by cryoEM. Taken together with other hardware and software developments, these technologies could dramatically alter the landscape of *in situ* cryoEM, with proteins as small as 100 kDa potentially being within reach."],"dc:format.checksum.md5":["7b15632c76f0e8dd90e1f31a3828fe70","87eda9de84448d1f82354d60eee3eb5f"],"dc:identifier.doi":["https://doi.org/10.17863/CAM.108196"],"dc:identifier.uri":["https://apollo8-f-pro.lib.cam.ac.uk/bitstreams/1b963423-f3c8-4012-b450-a87598c800db/download"],"dc:language":["eng"],"dc:publisher.institution":["University of Cambridge"],"dc:relation.isreferencedby.uri":["https://www.repository.cam.ac.uk/handle/1810/367720"],"dc:rights":["https://apollo8-f-pro.lib.cam.ac.uk/bitstreams/8318a90d-22fa-4706-840c-0cba7558eb19/download","https://www.rioxx.net/licenses/all-rights-reserved/"],"dc:subject":["Cc correction","cryoEM","Liquid Helium","Radiation Damage","Structural Biology","TEM"],"dc:title":["Hardware developments to improve image quality for cryoEM of biological specimens"],"dc:type":["Thesis"],"dc:type.qualificationlevel":["Doctoral"],"dc:type.qualificationname":["Doctor of Philosophy (PhD)"]},"updated_at":"2026-07-22T22:24:10Z"}