{"id":{"repo_id":"cambridge","oai_identifier":"oai:www.repository.cam.ac.uk:1810/366431"},"canonical_url":"https://search.dev.ndltd.org/etd/cambridge/oai:www.repository.cam.ac.uk:1810/366431","repository":{"repo_id":"cambridge","name":"Cambridge University","base_url":"https://api.repository.cam.ac.uk/server/oai/request"},"display":{"title":"Novel Structures of RAD51 Reveal Mechanisms in DNA Damage Repair and Genomic Stability","abstract":"The RAD51 protein contributes to the maintenance of genomic stability by promoting the repair of DNA double-strand breaks and the protection of DNA replication forks. RAD51 functions alongside the tumour suppressor protein BRCA2 to catalyse DNA strand-exchange reactions which form an integral part of Homology-Directed Repair. RAD51 has been the subject of decades of research which has helped to elucidate many mechanisms underpinning its function, however numerous key questions still remain. In this thesis I present three-dimensional structures of RAD51 nucleoprotein filaments together with biochemical and biophysical data that reveal new insights into how RAD51 contributes to maintaining the stability of our genome. High-resolution structures of RAD51 filaments on single- (ss-) and double-stranded (ds-) DNA revealed the presence of a second metal cation at the ATP-binding site, which forms the basis for a mechanism of ATP-hydrolysis dependent filament disassembly, confirmed by the structure of a RAD51 filament in the presence of ADP. Here I also describe two structures of RAD51 bound to the C-terminus of BRCA2, which show how BRCA2 binds to and stabilises RAD51 filaments during DNA replication and repair. A low- resolution structure of a RAD51 synaptic filament is also presented here, which suggests that the mechanism of recombinase-catalysed strand exchange is conserved throughout the three domains of life. Furthermore, I demonstrated that RAD51 can bind to DNA damaged by base hydrolysis, based on the structure of RAD51 nucleoprotein filaments that reveal specific recognition of abasic sites. Finally, I show that RAD51 can bind RNA substrates, as established by RAD51 filament structures bound to ssRNA and a DNA : RNA hybrid. Collectively these structures and supporting biochemical experiments highlight new mechanisms of RAD51 function in both DNA repair and DNA replication.","abstract_html":"The RAD51 protein contributes to the maintenance of genomic stability by promoting the repair of DNA double-strand breaks and the protection of DNA replication forks. RAD51 functions alongside the tumour suppressor protein BRCA2 to catalyse DNA strand-exchange reactions which form an integral part of Homology-Directed Repair. RAD51 has been the subject of decades of research which has helped to elucidate many mechanisms underpinning its function, however numerous key questions still remain. In this thesis I present three-dimensional structures of RAD51 nucleoprotein filaments together with biochemical and biophysical data that reveal new insights into how RAD51 contributes to maintaining the stability of our genome. High-resolution structures of RAD51 filaments on single- (ss-) and double-stranded (ds-) DNA revealed the presence of a second metal cation at the ATP-binding site, which forms the basis for a mechanism of ATP-hydrolysis dependent filament disassembly, confirmed by the structure of a RAD51 filament in the presence of ADP. Here I also describe two structures of RAD51 bound to the C-terminus of BRCA2, which show how BRCA2 binds to and stabilises RAD51 filaments during DNA replication and repair. A low- resolution structure of a RAD51 synaptic filament is also presented here, which suggests that the mechanism of recombinase-catalysed strand exchange is conserved throughout the three domains of life. Furthermore, I demonstrated that RAD51 can bind to DNA damaged by base hydrolysis, based on the structure of RAD51 nucleoprotein filaments that reveal specific recognition of abasic sites. Finally, I show that RAD51 can bind RNA substrates, as established by RAD51 filament structures bound to ssRNA and a DNA : RNA hybrid. Collectively these structures and supporting biochemical experiments highlight new mechanisms of RAD51 function in both DNA repair and DNA replication.","abstract_has_math":false,"creators":["Appleby, Robert"],"institution":"University of Cambridge","degree_name":"Doctor of Philosophy (PhD)","degree_level":"Doctoral","degree_discipline":null,"degree_department":null,"school":null,"contributors":[],"advisors":["Pellegrini, Luca","Blundell, Thomas"],"committee_chairs":[],"committee_members":[],"year":2023,"date_issued":"2023-11-30","date_published":"2023-11-30","updated_at":"2026-07-22T22:24:10Z","subjects":["BRCA2","CryoEM","Homologous Recombination","RAD51"],"languages":["eng"],"rights":[],"rights_urls":["https://apollo8-f-pro.lib.cam.ac.uk/bitstreams/2260d8bb-4d1d-4705-9842-4d983313058f/download","https://www.rioxx.net/licenses/all-rights-reserved/"],"identifier_entries":[]},"links":{"outbound_url":"https://doi.org/10.17863/CAM.107370","outbound_label":"DOI","outbound_source":"dc:identifier.doi"},"metadata_groups":[{"id":"people","label":"People","entries":[{"key":"dc:contributor.advisor","label":"Advisor","values":["Pellegrini, Luca","Blundell, Thomas"]},{"key":"dc:creator","label":"Author","values":["Appleby, Robert"]}]},{"id":"academic_context","label":"Academic Context","entries":[{"key":"dc:date.issued","label":"Date","values":["2023-11-30"]},{"key":"dc:publisher.institution","label":"Dc Publisher Institution","values":["University of Cambridge"]},{"key":"dc:relation.isreferencedby.uri","label":"Dc Relation Isreferencedby URI","values":["https://www.repository.cam.ac.uk/handle/1810/366431"]},{"key":"dc:type","label":"Dc Type","values":["Thesis"]},{"key":"dc:type.qualificationlevel","label":"Dc Type Qualificationlevel","values":["Doctoral"]},{"key":"dc:type.qualificationname","label":"Dc Type Qualificationname","values":["Doctor of Philosophy (PhD)"]}]},{"id":"subjects_keywords","label":"Subjects and Keywords","entries":[{"key":"dc:subject","label":"Dc Subject","values":["BRCA2","CryoEM","Homologous Recombination","RAD51"]}]},{"id":"language_rights","label":"Language and Rights","entries":[{"key":"dc:language","label":"Dc Language","values":["eng"]},{"key":"dc:rights","label":"Dc Rights","values":["https://apollo8-f-pro.lib.cam.ac.uk/bitstreams/2260d8bb-4d1d-4705-9842-4d983313058f/download","https://www.rioxx.net/licenses/all-rights-reserved/"]}]},{"id":"identifiers","label":"Identifiers","entries":[{"key":"dc:identifier.doi","label":"DOI","values":["https://doi.org/10.17863/CAM.107370"]},{"key":"dc:identifier.uri","label":"Identifier URI","values":["https://apollo8-f-pro.lib.cam.ac.uk/bitstreams/b60d1b06-32bd-46a0-9811-c26520185399/download"]}]},{"id":"additional","label":"Additional Metadata","entries":[{"key":"dc:description.abstract","label":"Abstract","values":["The RAD51 protein contributes to the maintenance of genomic stability by promoting the repair of DNA double-strand breaks and the protection of DNA replication forks. 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Here I also describe two structures of RAD51 bound to the C-terminus of BRCA2, which show how BRCA2 binds to and stabilises RAD51 filaments during DNA replication and repair. A low- resolution structure of a RAD51 synaptic filament is also presented here, which suggests that the mechanism of recombinase-catalysed strand exchange is conserved throughout the three domains of life. Furthermore, I demonstrated that RAD51 can bind to DNA damaged by base hydrolysis, based on the structure of RAD51 nucleoprotein filaments that reveal specific recognition of abasic sites. Finally, I show that RAD51 can bind RNA substrates, as established by RAD51 filament structures bound to ssRNA and a DNA : RNA hybrid. 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RAD51 has been the subject of decades of research which has helped to elucidate many mechanisms underpinning its function, however numerous key questions still remain. In this thesis I present three-dimensional structures of RAD51 nucleoprotein filaments together with biochemical and biophysical data that reveal new insights into how RAD51 contributes to maintaining the stability of our genome. High-resolution structures of RAD51 filaments on single- (ss-) and double-stranded (ds-) DNA revealed the presence of a second metal cation at the ATP-binding site, which forms the basis for a mechanism of ATP-hydrolysis dependent filament disassembly, confirmed by the structure of a RAD51 filament in the presence of ADP. Here I also describe two structures of RAD51 bound to the C-terminus of BRCA2, which show how BRCA2 binds to and stabilises RAD51 filaments during DNA replication and repair. 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