Exploring Multivariate Gene-Environment Interactions: Models And Applications
type: CreativeWork
description: Complex diseases are driven by multiple risk factors, including genetic variants, environmental exposures and interactions between the two. The advent of GWAS in 2005 and subsequent methodological advances have increased our knowledge of the genetic risk factors underpinning complex diseases. In addition, some research exploring genotype-environment interaction (G$\times$E) effects has been conducted, \newline revealing that multiple environments are linked to interaction effects at a single locus for a given trait. However, correlation between these identified environments renders interpretation of the results difficult. This, together with the collation of large-scale biobanks that contain a multitude of phenotypic and environmental data (facilitating an increase in the number of G$\times$E effects detected) has generated the need for methods that jointly account for G$\times$E at multiple environments. Such methods may also increase the power to detect interaction effects by aggregating modest or weak G$\times$E effects across environments and in addition enable additional phenotypic variance to be explained. Thus, the aim of this thesis is to provide suitable methods to identify variants subject to G$\times$E effects, jointly accounting for multiple environmental exposures and explore these effects across a range of phenotypes using the UK Biobank data. In Chapter 2, I describe the structured linear mixed model (StructLMM), a novel computationally efficient multivariate G$\times$E framework. This model can be used to test for interaction or association effects. The latter accounts for possible \newline heterogeneity in variant effects across individuals due to differences in environmental exposures, thus enabling the detection of variant effects that might otherwise be masked due to the presence of interaction effects. I show through the use of simulation experiments that StructLMM is robustly calibrated and in general, better powered than existing interaction a…
abstract: Complex diseases are driven by multiple risk factors, including genetic variants, environmental exposures and interactions between the two. The advent of GWAS in 2005 and subsequent methodological advances have increased our knowledge of the genetic risk factors underpinning complex diseases. In addition, some research exploring genotype-environment interaction (G$\times$E) effects has been conducted, \newline revealing that multiple environments are linked to interaction effects at a single locus for a given trait. However, correlation between these identified environments renders interpretation of the results difficult. This, together with the collation of large-scale biobanks that contain a multitude of phenotypic and environmental data (facilitating an increase in the number of G$\times$E effects detected) has generated the need for methods that jointly account for G$\times$E at multiple environments. Such methods may also increase the power to detect interaction effects by aggregating modest or weak G$\times$E effects across environments and in addition enable additional phenotypic variance to be explained. Thus, the aim of this thesis is to provide suitable methods to identify variants subject to G$\times$E effects, jointly accounting for multiple environmental exposures and explore these effects across a range of phenotypes using the UK Biobank data. In Chapter 2, I describe the structured linear mixed model (StructLMM), a novel computationally efficient multivariate G$\times$E framework. This model can be used to test for interaction or association effects. The latter accounts for possible \newline heterogeneity in variant effects across individuals due to differences in environmental exposures, thus enabling the detection of variant effects that might otherwise be masked due to the presence of interaction effects. I show through the use of simulation experiments that StructLMM is robustly calibrated and in general, better powered than existing interaction a…
author: Moore, Rachel
language: en
keywords: Genetics, Gene-environment interactions, Phenome-wide association study, Genome-wide association study, Cardiometabolic traits, StructLMM
license: https://apollo8-f-pro.lib.cam.ac.uk/bitstreams/768074d7-8ef3-4012-bc93-279d2f0278e6/download
license: https://www.rioxx.net/licenses/all-rights-reserved/
date published: 2019-05-18
date modified: 2026-07-22T22:24:18Z
provider: Cambridge University
publisher: Networked Digital Library of Theses and Dissertations
type: WebPage
source organization: University of Cambridge

PropertyValue
property ID: DOI
value: 10.17863/CAM.38150