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Showing 1 to 15 of 15 for “"rps16"”.
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Phylogenetic studies in the genus Jamesbrittenia tribe Manuleae, family Scrophulariaceae
… J. dissecta in Sudan, Egypt and India). Plastid (rps16 and psbA-trnH) and nuclear (GScp) sequences were obtained for 42 species, mostly from the arid winter-rainfall west and southern regions of southern Africa. Applying both parsimony and Bayesian inference to combined molecular and morphological …
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Application of High Resolution Melting analysis for haplotype detection in phylogeographic research and case studies of Arenaria ciliata, A. norvegica and Minuartia recurva (Caryophyllaceae)
… recurva. Non-coding chloroplast DNA loci, rps16 intron (c.750bp for Arenaria and c.690bp for Minuartia) and trnT-trnL (c.640bp for Arenaria and c.540bp for Minuartia) are used in HRM analysis, where they are split into smaller (<400bp) amplicons for each real-time PCR reaction. The protocol …
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A phylogenetic and monographic study of Oxypolis, Ptilimnium, and closely related genera (Apiaceae)
… (ITS) region and the chloroplast DNA trnQ-5'rps16 and 3'rps16-5'trnK intergeneric spacer regions were used to estimate the phylogenetic relationships of Oxypolis, Ptilimnium, and closely related genera. The sequence data were analyzed using maximum parsimony, maximum likelihood and Bayesian …
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Phylogeny reconstruction of the Schoeneae (Cyperaceae) with a focus on southern African genera
… and nuclear DNA sequences (rbcL, trnL-trnF, rps16, ITS and ETS) were analysed. New sequences were added to the matrix from Verboom (2006). Parsimony method was used for phylogeny reconstruction. Morphological characters were then optimised on the parsimony tree using both maximum likelihood …
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Cyperaceae tribe Cyperae : phylogenetic relationships and evolutionary patterns of diagnostic characters
… plastid DNA (rbcL, trnL-F intergenic spacer, and rps16), nuclear ribosomal DNA (internal transcribed spacer ITS) sequences and morphological data. From both analyses, tribe Cypereae were resolved into a very strongly supported clade (Posterior probability =98%; Bootstrap= 100%) characterised by …
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Molecular Phylogeny of the Genus Houstonia and Allies in Rubiaceae
… two sections. Nuclear (ITS) and plastid (trnL-F, rps16) DNA sequences were used to build a molecular phylogeny depicting relationships within Houstonia and among the closely related genera Stenaria and Stenotis, all of which used to be considered Hedyotis. Separate and combined datasets show …
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Morphology, Molecular Phylogeny and Genome content of Bothriochloa focusing on Australian taxa
… characters were observed, three regions (trnT-F, rps16 intron and 3'trnK) of chloroplast genome phylogenetic were used in phylogenetic reconstruction, and chromosome counting as well as flow cytometry for chromosome number and genome size were conducted during the study. Phylogenetic trees were …
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Deletion plastidärer ribosomaler Proteine in Nicotiana tabacum im Kontext reduktiver Genomevolutionund Entwicklung einer Hochdurchsatzplattform zur Analysevon miRNAs in Chlamydomonas reinhardtii
… (rps15, rpl36) und fünf essentielle (rps3, rps16, rpl22, rpl23, rpl32) im Plastom von Nicotiana tabacum kodierte Proteine des plastidären Ribosoms bezüglich ihrer Essentialität charakterisiert werden. Diese Gene wurden durch gezielte Knockout-Experimente inaktiviert und die resultierenden …
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Molecular systematics of the cashew family (Anacardiaceae)
… of three chloroplast loci (matK, trnLF, and rps16), using maximum parsimony and maximum likelihood as the optimality criteria. Based on these reconstructions and current knowledge of morphological and anatomical attributes of the Anacardiaceae, the subfamilies of Takhtajan, Anacardioideae …
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The complete plastid genome sequence of Passiflora cincinnata: genome rearrangements, massive plastid gene losses and implications to genome-plastome incompatibility
… are essential for cell viability (infA, rps7, rps16, rpl20, rpl22, ycf1 and ycf2), which very likely were functionally transferred to the nucleus and its products are imported into plastid. This genome also showed a high rate of nucleotide substitution in several genes, such as accD and clpP. …
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A Phylogenetic Study of Cymopterus and Related Genera (Apiaceae)
… internal transcribed spacer) and chloroplast ( rps16 intron and trnF-trnL- trnT) DNA sequences were carried out for 129 accessions (22 genera) of North American Apioideae to evaluate the monophyly of Cymopterus , and to ascertain its phylogenetic placement among these other genera. To elucidate …
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Molecular systematics, biogeography and dating of the tribe Haemantheae (Amaryllidaceae) and the phylogeography of Clivia
… trnL intron, trnL-F intergenic spacer, the rps16 intron, the psbA-trnH intergenic spacer and internal transcribed spacer region (ITS) have been collected and analysed for 62 taxa within this tribe using two outgroups within Amaryllidaceae. Combined parsimony and Bayesian analyses of the five …
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Phylogenetic relationships and the effects of edaphic heterogeneity on the distribution of Wiborgia (Fabaceae) in the Greater Cape Floristic region
… multiple molecular markers (ITS, rpl32-trnL, rps16, trnS-trnG, and trnT-trnL) and the data were analysed using model based approaches (Maximum Likelihood, Bayesian inference). Wiborgia was well supported as monophyletic and sister to both Wiborgiella and Aspalathus, with Wiborgiella humilis …
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Systematics of the Philippine endemic Ixora L. (Rubiaceae, Ixoreae)
… analyses of the combined chloroplast markers (rps16 and trnT–F) and nuclear markers (ITS and ETS), two main lineages of Ixora were recovered, an Asian-Pacific lineage and an Asian-African-Malagasy-Mascarene-Neotropical lineage. Also, the results of the Statistical Dispersal-Vicariance Analysis …
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A Phylogenetic Study of the Arracacia Clade (Apiaceae)
… of the four most variable cpDNA regions (trnQ–5’ rps16, trnD–trnT, rpl32–trnL, and ndhA intron) and two nrDNA regions (ITS and ETS [= external transcribed spacer]) were conducted. From the combined analyses, groups were recognized and delimited for future studies. Cladistic analyses of molecular …