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Showing 1 to 3 of 3 for “"reaction-diffusion master equation"”.
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Stochastic Modeling and Simulation of Reaction-Diffusion Biochemical Systems
Reaction Diffusion Master Equation (RDME) framework, characterized by the discretization of the spatial domain, is one of the most widely used methods in the stochastic simulation of reaction-diffusion systems. Discretization sizes for RDME have to be appropriately chosen such that each discrete …
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Stochastic and physical modeling of fundamental biological processes
… E. coli. The model, described in terms of reaction-diffusion master equations, contains 1336 reactions and 251 species that dynamically couple transcription and translation to ribosome assembly. We use the Lattice Microbes software package to simulate the stochastic production of mRNA, …
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Computational investigations of evolutionary transitions during development of the cellular translation and transcription machinery
Made available in DSpace on 2010-05-20T15:17:09Z (GMT). No. of bitstreams: 3 Roberts_Elijah.pdf: 13764340 bytes, checksum: 57acba078606d8ad6576a416d72ba5ac (MD5) 1_Roberts_Elijah.pdf: 13764360 bytes, checksum: 485ad430aa88441f48b2a96cec5afcdf (MD5) license.txt: 4064 bytes, checksum: …