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Showing 1 to 1 of 1 for “"domain specific parallelization"”.
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Parallelization of dynamic programming recurrences in computational biology
… in bioinformatics workloads. We study algorithm-specific hardware architectures that exploit fine-grained parallelism in dynamic programming kernels using field-programmable gate arrays: FPGAs). We advocate a high-level synthesis approach, using the recurrence equation abstraction to represent …