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Showing 1 to 3 of 3 for “"covariation analysis"”.

  1. Mechanistic Studies of the Activation of Ubiquitin-Conjugating Enzymes by Ring-Type Ubiquitin Ligases

    … thioester bond. Using the Statistical Coupling Analysis, a pairwise residue covariation analysis, we observe that E2 enzymes have a set of residues that vary as a group throughout evolution. Extensive mutagenesis of the E2 enzyme UbcH5b, including its covarying residues, yield mutants that can …

    utswmed Repository record for Mechanistic Studies of the Activation of Ubiquitin-Conjugating Enzymes by Ring-Type Ubiquitin Ligases (opens in a new tab)

  2. The plastid caseinolytic protease complex as a model for cytonuclear coevolution

    … the sequences of component subunits. This covariation is strong enough to be used as a method to predict which proteins are connected physically and/or functionally. The coevolution between multiple genomes in eukaryotic cells is known as cytonuclear coevolution. Plants, for example, have a …

    colostate Repository record for The plastid caseinolytic protease complex as a model for cytonuclear coevolution (opens in a new tab)

  3. Progress Towards Integrated Models of HCV Dynamics

    … proteins. Some of the challenges to the study of covariation in HCV MSAs were identified, and we describe a novel method of calculating covariation which addresses some of these issues, particularly the problem of phylogenetic covariance. While an integrated dynamic model of HCV remains far from …

    rockefeller Repository record for Progress Towards Integrated Models of HCV Dynamics (opens in a new tab)