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Showing 1 to 20 of 36 for “"contig"”.

  1. Variation in Recombination Rate on BTA23: Fine Mapping and Construction of a YAC Contig

    Park, ChankyuUniversity of Illinois at Urbana-Champaign2015

    … for variation in $\Theta$, a partial YAC contig was constructed for the D23S22-D23S23 interval. Primary screening of a YAC library yielded 17 YAC clones (sized from 180-2200 kb). For all YACs, YAC-end sequence rescue by inverse or vectorette PCR was used to develop 27 new STSs. All YAC …

    uiuc Repository record

  2. Physikalische Kartierung eines Genorts für das Senior-Løken Syndrom (SLS) auf Chromosom 15q22-q26

    Briese, Sonia

    … der Kandidatenregion hergestellt. Das minimale Contig, welches die flankierenden Marker enthält, besteht aus 4 YACs und hat eine maximale Größe von 4,385 Mb. Insgesamt konnten 19 ESTs auf dem YAC-Contig kartiert werden, wovon sich 9 innerhalb der flankierenden Markern befinden. Unter anderem …

    freiburg-diss Repository record

  3. Assembly and Automated Annotation of the <i>Clostridium scatologenes</i> Genome

    Tiwari, Jitesh

    … sequences were combined and assembled into 8267 contigs with an average length of 1250 bp with the Newbler Assembler program. Comparision of published subunits of csd gene and assembled contigs identified that one contig contained all three subunits. In addition a gene with similarity to …

    wku-diss Repository record

  4. Some Probability Methods For DNA Sequence Analysis

    Nguyen, Justin D.

    … of the DNA. These overlapping fragments form a contig. In this thesis, probability methods to study the mean number of contigs and mean contig size are presented. We also consider fragments with markers present, which form anchored contigs. Probability methods to study repeat nature of any …

    mo-state Repository record

  5. Molecular analysis of the sex-determining region of the Y chromosome in the platyfish Xiphophorus maculatus

    Zhou, QingchunUniversität Würzburg

    … purpose, Bacterial Artificial Chromosome (BAC) contigs were assembled from a BAC library of XY males constructed in our laboratory, using the oncogene Xmrk, egfrb, as well as a Y-specific pseudogene called ps-criptY as starting points. The ps-criptY sequence was found to be closely linked to the …

    wurz-thes Repository record

  6. Physical and genetic mapping on mouse proximal chromosome 18

    Hsu, Ssucheng Jeff, 1964-The University of Arizona.1998

    An 8-Mb yeast artificial chromosome (YAC) contig has been constructed spanning 9 cM on mouse proximal chromosome 18. The contig consists of 49 YAC clones that cover roughly 15% of the chromosome. The map was assembled based on the presence or absence of 38 DNA microsatellites, from proximal …

    arizona-thes Repository record

  7. Expressionskartierung des menschlichen Chromosoms 11p13

    Niederführ, AlexandraUniversität Würzburg

    … dieser Region wurde ausgehend von einem YAC-Contig, das 8 Mb des Chromosoms 11p13-14.1 abdeckt, eine Feinkartierung der Region 11p13 durchgeführt. Über ein Screening einer humanen PAC-Bibliothek mit 11p13-spezifischen Proben, wurden PAC-Klone erhalten, die aus dieser Region stammen. Mit einem …

    wurz-thes Repository record

  8. Molekulare Klonierung der kritischen Region der Fibronektinglomerulopathie (GFND) auf Chromosom 1q31 und Bewertung von Kandidatengenen

    Kremer, Mathias

    … <br>In der vorliegenden Arbeit wurde das YAC-Contig zur Feinkartierung durch ein PAC-Contig (38 PAC-Klone) ergänzt. Dieses umfasst innerhalb der kritischen Region (3,54 kb) 93 Marker, (12 polymorphe Mikrosatellitenmarker, 53 EST-Marker und 28 Endsequenzmarker). <br> <br>Parallel wurden …

    freiburg-diss Repository record

  9. Genome Rearrangements: Structural Inference and Functional Consequences

    Munoz, AdrianaUniversity of Ottawa (Canada)2013

    … of genomes being published in scaffold or even contig form. Rearrangement algorithms, including gene order-based phylogenetic tools, require whole genome data on gene order or syntenic block order. Then, for gene order-based comparisons or phylogeny, how can we use rearrangement algorithms to …

    ottawa-retro Repository record

  10. Family and tumour studies in breast and oesophageal cancer

    Kelsell, David PeterThe Open University1997

    … the identification of this gene, a YAC contig was constructed spanning the published minimal genetic interval for BRCA2. This contig provided a framework for the identification of BRCA2. Allele loss studies were also performed and indicated that BRCA1 acts as a tumour suppressor. …

    the-open-u Repository record

  11. Retroviruses in the common brush-tailed possum (Trichosurus vulpecula)

    Baillie, Gregory JohnThe University of Waikato1999

    … and RT-PCR. The sequences were assembled into a contiguous sequence, the TvERV-K1 contig. In addition, a near-full-length TvERV-K1-related fragment, was amplified from possum genomic DNA, cloned, and sequenced. It was named pTvERV-K2. The TvERV-K elements are the first full-length marsupial …

    waikato-masters Repository record

  12. GeneSieve: A Probe Selection Strategy for cDNA Microarrays

    Shukla, MaulikVirginia Tech2004

    … annotations to the ESTs, we cluster them into contigs using PHRAP. The larger contig sequences are then used for similarity search against known proteins in model organism such as Arabidopsis thaliana. We have designed three different methods to assign annotations to the contigs: bidirectional …

    vt Repository record

  13. Improving genome assembly by identifying reliable sequencing data

    2014

    … Genome assembly has two major subproblems: contig construction and scaffolding. A contig is a continu- ous sub-sequence of the genome assembled from sequencing reads. Scaffolding attempts to construct a linear sequence of contigs (with possible gaps in between) using paired reads (two reads …

    rutgers

  14. Physikalische Kartierung der RT1-C/M-Region des Haupthistokompatibilitätskomplexes der Ratte

    Ioannidu, Sofia2012

    … RT1-C/E/M, of the BN inbred rat strain in a contig of overlapping P1-derived artificial chromosome clones encompassing 2 Mb, and present a physical map of this MHC region. Forty-five class I exon 4-hybridizing BamHI fragments were detected, including the previously known rat class I genes …

    goettingen Repository record

  15. Exploring the Potential Use of Camelina Sativa as a Biofuel Crop for Nevada

    Acharjee, Tapas C.2011

    … to drought, cold and high salinity stress Some contig assemblies corresponding to stress-inducible gene and genes involved in fatty acid biosynthesis were observed in this study.

    unr Repository record

  16. A molecular investigation of the novel gene underlying autosomal dominant retinitis pigmentosa in a South African family

    Bardien-Kruger, SorayaDivision of Human Genetics1999

    … a physical map of the 1 cM critical region. A contig consisting of seven yeast artificial chromosome (YAC) clones was assembled using sequence-tagged-site (STS) content mapping. In order to close a gap in the YAC contig, a bacterial artificial chromosome (BAC) library was screened and the …

    cape-town Repository record

  17. Physical mapping of a 2-Mb region centered at D10S94, a locus very tightly linked to the multiple endocrine neoplasia type 2 gene(s)

    Wilson, Angela R.University of British Columbia1993

    … The genomic long range restriction map and YAC contig span the entire refined MEN2A candidate region. This map and contig can now serve as a guide and a cloning source, respectively, for experiments designed to identify genes within this region, and an intensive search for potentially …

    ubc Repository record

  18. Molecular characterization of microbial communities in small-scale biodigesters using whole genome shotgun metagenomic approach

    Matamela, Tendani2025

    … integrating data from metagenomic reads, contigs, and metagenome-assembled genomes (MAGs) can achieve a more comprehensive understanding of microbial taxonomy and functional capabilities in biodigesters. This study investigates the microbial communities in small-scale biodigesters, using …

    venda Repository record

  19. Improving the genome assembly and annotation of the white-tailed deer (Odocoileus virginianus borealis)

    London, Evan W.University of Illinois at Urbana-Champaign2021

    … evidence. The final assembly was highly contiguous, with 90% of the total length represented by 134 contigs. The largest contig was 108 million base pairs. Functional annotation was performed using reciprocal best hits with cattle protein sequences. Protein function was able to be …

    uiuc Repository record

  20. A SURVEY OF THE COMMON LOON (Gavia immer) GENOME REVEALS PATTERNS OF NATURAL SELECTION

    Gayk, Zach G2015

    … immer</em>) genome. The resulting assembly had a contig N50 of 814 bp, a total length of 767,326,331 bp, and 45.7 % GC content. I identified fragments of 13,821 common loon genes with known function and another 348 coding sequences of unknown function, for a total of 14,169 common loon genes. …

    nmu Repository record

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