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Showing 1 to 3 of 3 for “"Variant Filtering"”.

  1. A new filtering method for improving the quality of variant discovery

    Variants identified by current genomic analysis pipelines contain many incorrectly called variants. These can be potentially eliminated by applying state-of-the-art filtering tools, such as Variant Quality Score Recalibration (VQSR) or Hard Filtering (HF). However, these methods are very …

    uiuc Repository record for A new filtering method for improving the quality of variant discovery (opens in a new tab)

  2. Algorithms for genomic variant identification and interpretation

    Submission published under a 24 month embargo labeled 'U of I Access', the embargo will last until 2025-05-01

    uiuc Repository record for Algorithms for genomic variant identification and interpretation (opens in a new tab)

  3. Functional Genome-wide Association Studies (fGWAS) and genomics landscape of signatures of polygenic adaptation in Botswana populations with HIV-1 C infection

    … collected and utilised for further studies after variant calling, strict variant filtering, quality checking; and phasing using the tools PLINK V2.00A2LM and EAGLE v2.1, respectively. A total of 226 PWH (all female) and 112 controls (those without HIV infection30 men and 82 females-) were included …

    cape-town Repository record for Functional Genome-wide Association Studies (fGWAS) and genomics landscape of signatures of polygenic adaptation in Botswana populations with HIV-1 C infection (opens in a new tab)