Global ETD Search
Search theses and dissertations gathered from participating repositories worldwide. Every result links back to the library that holds it. No account is needed.
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Showing 1 to 6 of 6 for “"Tophat"”.
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Analysis of the product development process for geographically distant teams in vehicle tophat design phases
… are initially launched designing a base tophat, it is important to update such information after the design is verified and re-use it as well as those resources that generated and that understand the system's performance. This approach will improve platform level quality and time to …
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Performance comparison of five RNA-seq alignment tools
… and sensitivity of the Bowtie, Bowtie2, GMAP, Tophat and GNUMAP tools, their alignment accuracy for approximately 1 million simulated reads of chromosome one was evaluated using these five alignment tools. Bowtie has the highest accuracy, which is 92.42%, while GMAP has the lowest, which is …
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RNA-sequence analysis of human melanoma cells
… sequence (NCBI 36.1 [hg19] assembly) using Tophat and Bowtie software's. Then, using Cufflinks software the alignments are assembled into gene transcripts and relative abundances are obtained. Finally, differentially expressed genes are found by comparing the affected samples with a control …
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Next Generation Sequencing Reveals Gene Expression Patterns in the Zebrafish Inner Ear Following Growth Hormone Injection
… Pipeline version SCS 2.8.0 were aligned using TopHat and annotated using Cufflinks. The statistically significant differentially expressed transcripts were identified using Cuffdiff for six different pairwise comparisons and were analyzed using Ingenuity Pathway Analysis. I found significant …
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Análise dos mecanismos de splicing alternativo em resposta ao déficit hídrico em soja (Glycine max)
… de referência da soja usando o alinhador Bowtie/TopHat, em seguida avaliado o perfil de expressão gênica pelo pacote Cufflinks/Cuffdiff, que mostraram uma gama de genes que foram alterados em função do estresse, com uma perturbação mais branda para a variedade mais tolerante EMBRAPA48. Nossa …
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Next-generation sequencing analysis and RNA editing in human brain and glioma
RNA sequencing (RNA-seq) is one of the most common technologies in use today for the analysis of gene expression and transcriptome variation in biological samples (Zhong Wang et al. 2009). As of 2011, the NCBI Sequence Read Archive (SRA) surpassed 100 terabases of sequence data, comprising nearly …