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Showing 1 to 3 of 3 for “"StochSim"”.
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A Gillespie-Type Algorithm for Particle Based Stochastic Model on Lattice
… and analyze its complexity compared with the StochSim algorithm, another simulation algorithm originally proposed to simulate stochastic lattice model. I compare the performance of both algorithms with application to two different examples: the May-Leonard model and Ziff-Gulari-Barshad model. …
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Stochastic Simulation Methods for Solving Systems with Multi-State Species
… Morton-Firth and Bray's stochastic simulator (StochSim) was proposed with a particle-based scheme. The thesis first provides a detailed comparison between these two methods, and then proposes improvements on StochSim and a hybrid method to combine the advantages of the two methods. Analysis and …
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Stochastic Simulation Methods for Biochemical Systems with Multi-state and Multi-scale Features
… stochastic simulation algorithm (SSA) with the StochSim, an agent-based simulation method. Based on the analysis, we propose a hybrid method that possesses the advantages of both methods. Then we propose two new methods that extend the Network-Free Algorithm (NFA) for rule-based models. …