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Showing 1 to 3 of 3 for “"Sourmash"”.
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Comparative Analysis of Genomic Similarity Tools in Species Identification
… (pyANI, Fas- tANI) and k-mer-based methods (Sourmash, BinDash 2.0). The analysis focuses on high- quality genomic datasets characterized by 100% completeness, ensuring consistency and accuracy in the comparison process. The pipeline processes genomes under uniform con- ditions, recording key …
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COVID-19 Variant Analyzer through Genomic Sequences and Jaccard Similarities
… employs advanced bioinformatics tools including sourmash for signature generation and NumPy for computational analysis, alongside Python-MySQL connectors for seamless database interactions. It implements similarity thresholds of 0.817 for primary classification and 0.867 for secondary validation …
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Tackling the current limitations of bacterial taxonomy with genome-based classification and identification on a crowdsourcing Web service
… algorithm BLASTN and the alignment-free method Sourmash, which is based on k-mers, and the MinHash algorithm. The potential of LINbase is shown by using examples of plant pathogenic bacteria.