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Showing 1 to 2 of 2 for “"Side Effect Machines"”.
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Decoding algorithms using side-effect machines
… problems with applications to DNA. By using side effect machines we hope to be able to provide efficient decoding algorithms for this open problem. Two ideas for decoding algorithms are presented and examined. Both decoders use Side Effect Machines(SEMs) which are generalizations of finite …
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A Multi-Objective Genetic Algorithm with Side Effect Machines for Motif Discovery
… algorithm to evolve a specialized version of side effect machines for degenerate motif discovery. We compare some suggested objectives for the motifs they find, test different multi-objective scoring schemes and probabilistic models for the background sequence models and report our results on …