Global ETD Search
Search theses and dissertations gathered from participating repositories worldwide. Every result links back to the library that holds it. No account is needed.
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Showing 1 to 12 of 12 for “"Sequence Search"”.
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Twilight zone : protein sequence search and classification
Thesis (M.S.)--Michigan State University. Fisheries and Wildlife, 2010
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Analysis and Abstraction of Parallel Sequence Search
The ability to compare two biological sequences is extremely valuable, as matches can suggest evolutionary origins of genes or the purposes of particular amino acids. Results of such comparisons can be used in the creation of drugs, can help combat newly discovered viruses, or can assist in …
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Exploiting Multigrain Parallelism in Pairwise Sequence Search on Emergent CMP Architectures
… the need for novel approaches to parallelize sequence search algorithms has become increasingly important. This thesis puts a significant step forward in bridging the gap between software and hardware by presenting an efficient and scalable model to accelerate one of the popular sequence …
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Characterization of Novel Neuronal Antigens in the Central Nervous System of Manduca Sexta
The predicted amino acid sequence of Ms-golgin80 is similar to several members of a growing family of coiled-coil, Golgi-associated proteins, including GM-130 and golgin-95. The Drosophila and Caenorhabditis elegans homologs of Ms-golgin80 were also identified through homology sequence search. …
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Advances in tortricid systematics and identification (Lepidoptera: Tortricidae)
… identification purposes and outlines a novel DNA sequence search tool developed for use in TortAI. Phylogenetic relationships surrounding Eucosma, the largest genus within the Tortricidae, are examined in chapters 8-9. A molecular phylogeny and revised classification for Eucosma and related genera …
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Entropy Measurements and Ball Cover Construction for Biological Sequences
… is making it easier to select or engineer DNA sequences that produce dangerous proteins, it is important to be able to predict whether a novel DNA sequence is potentially dangerous by determining its taxonomic identity and functional characteristics. These tasks can be facilitated by the ever …
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CONTRIBUTIONS OF SIGMA-B AND PRFA TO STRESS RESPONSE AND VIRULENCE GENE EXPRESSION IN LISTERIA MONOCYTOGENES
… regulated by sigmaB using a promoter consensus sequence search and microarrays. sigmaB directly controls expression of at least 54 genes. The genes regulated by sigmaB encode proteins with a wide variety of functions, including basic metabolic pathways, membrane solute transporters, and stress …
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Proteomics and Biological Evaluation of Marshmallow (Althea officinalis) Seeds
… gel electrophoresis. The partial amino acid sequence of 22 kDa protein was established up to 25 residues by N-terminal amino acid sequencing. The data suggest that Marshmallow RP-HPLC purified protein is a monomeric protein of 22 kDa. The amino acid sequence alignment using BLASTp revealed …
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Analysis of variation in protein domain families and interfaces
… alignments were extended with similar protein sequences by HMM-based sequence search. These sequences are believed to be structurally/functionally homologous and thus a rich source of novel insight into the structural context and potential consequences of a vast number of genetic variants. The …
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Multiple radar environment emission deinterleaving and PRI prediction
The aim of this study was to research TOA based tracking and deinterleaving algorithms suited to radar emitters in an EW environment for application on the CSIR 5th generation DRFM platform. The research problem statement stipulated that the only defining characteristic of the different emitters be …
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High-throughput protein engineering tools for efficient exploration and quantitative mapping of protein fitness landscapes
… from two main factors: (1) the nearly boundless search space of amino acid sequences resulting from the combinatorial explosion of possible mutations, and (2) the complex sequence-function relationships that make it challenging to rationally narrow down the vast sequence search space to a …
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Single molecule investigation of transcription activator-like effector search dynamics
… fluorescence imaging to the study the TALE search process along specific and non-specific DNA templates. Our work provides a molecular-level picture of the dynamics of TALE-DNA interactions, and our results have revealed an apparently unique search mechanism for DNA binding proteins. We …