Global ETD Search
Search theses and dissertations gathered from participating repositories worldwide. Every result links back to the library that holds it. No account is needed.
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Showing 1 to 6 of 6 for “"RNA-Seq pipeline"”.
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An integrative bioinformatics approach to characterize molecular landscapes and clinical outcomes in acute leukemias
… three levels: population-based disease patterns, RNA-seq-based molecular classification, and developmental interpretation. First, nationwide German cancer registry data were used to characterize acute leukemias. The analyses revealed age-dependent differences in incidence, treatment, and survival. …
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Effects of Drought on Gene Expression in Maize Reproductive and Leaf Meristem Tissues as Revealed by Deep Sequencing
… grain yield production. We developed a working RNA-Seq pipeline to study maize (Zea mays) drought transcriptome sequenced by Illumina GSIIx technology to compare drought treated and well- watered fertilized ovary (1-2DAP) and basal leaf meristem tissue. The pipeline also identified novel splice …
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User-friendly software per l'analisi di dati di coding and non-coding RNA-Seq: dai dati di sequenziamento non processati all'analisi delle pathway biologiche
L’RNA-Seq è una ben consolidata tecnologia usata estensivamente per i profiling dei trascrittomi che consente l’analisi sia di RNA codificanti che non codificanti. Purtroppo, questa tecnologia produce però un enorme mole di dati che necessitano quindi di più sofisticati sistemi computazionali …
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RNA CoMPASS: RNA Comprehensive Multi-Processor Analysis System for Sequencing
… is to develop a distributed computational pipeline for processing next-generation RNA sequencing (RNA-seq) data. RNA-seq experiments generate hundreds of millions of short reads for each DNA/RNA sample. There are many existing bioinformatics tools developed for the analysis and …
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Computational Pipeline for Human Transcriptome Quantification Using RNA-seq Data
… is concerned with developing a computational pipeline for processing Next-generation RNA sequencing (RNA-seq) data. RNA-seq experiments generate tens of millions of short reads for each DNA/RNA sample. The alignment of a large volume of short reads to a reference genome is a key step in NGS …
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Identification of common and unique stress responsive genes of Arabidopsis thaliana under different abiotic stress through RNA-Seq meta-analysis
… we performed meta-analysis of 652 samples of RNA sequencing (RNA-Seq) data from 43 published abiotic stress experiments in Arabidopsis thaliana. These samples were categorized into eight different abiotic stresses including drought, heat, cold, salt, light and wounding. We developed a …