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Showing 1 to 9 of 9 for “"RMSF"”.
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Molecular Dynamics Simulations Provide Insight into Stability of Hyperthermophilic Endoglucanases
… to thermostability in endoglucanases. RMSD, RMSF, PCA, hydrogen bonding and salt bridges were analyzed. Finally, protein energy networks were constructed from nonbonded interaction potentials and analysis was performed using hub population, cluster population, largest community transition …
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Biophysical Characterization of the Interaction between the Universal Stress G4LZI3 protein and Schistosoma mansoni Hsp60 Substrate Binding Domain
… analysis done in the study include RMSD, RMSF, RoG, SASA and Hydrogen bonding. Additionally, a sufficient amount (11.634 mg/ml) of recombinant G4LZI3 protein was successfully expressed and purified to homogeneity. SmHsp60 was also successfully expressed in the present study. Results …
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Upgrading the Protein Formulation Toolbox through Predictive and Explanatory Models
… outperforming traditional metrics such as mean RMSF. Graph analysis of simulated osmolyte-protein
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Biophysical characterisation of the interaction between the S.mansoni G4LZI3 protein and the NAD binding domain of glyceraldehyde-3 phosphate dehydrogenase
… dynamics simulation which included RMSD, RMSF and RoG in order to investigate the conformational transformation on the complex Apo-G4LZI3 and smNAD binding domain of G3PDH upon binding of the inhibitor. With the success of the in silico studies, the G4LZI3 protein was recombinantly …
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ScRING finger protein, Mdm2, MdmX, p53, cancer, ubiquitination, drug discovery, ZINC16046951, University of Zululand, South Africa
… using molecular dynamics tools, namely RMSD, RMSF and Rog. MM/PBSA and MM/GBSA were utilized to calculate binding free energy contributions per complex amino acids. Far-UV CD confirmed ScRING finger domain is a protein dominated by β-sheets which are a major contributing factor in protein …
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Epidemiologische Untersuchungen zum Vorkommen der Humanen Granulozytären Ehrlichiose und Babesiose bei Waldarbeitern aus Südbayern
… Labordiagnostik bei Lyme-Borreliose und RMSF ist kein optimaler Algorithmus für die Laborbestätigung der Humanen Ehrlichiose und Babesiose etabliert. Es besteht somit weiterhin großer Forschungsbedarf auf dem Gebiet der durch Zecken übertragenen Erkrankungen in Deutschland und Europa.
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Biophysical and computational insights into the stability of RhoB and its cancer-associated variants
… exhibited higher root mean square fluctuations (RMSF) in various functional regions of the small GTPase; for example, an increased amplitude of motion was observed in the switch I region of RhoB than for the equivalent region in Cdc42 – sequence differences could be influencing this increased …
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Molecular Detection and Characterization of Rickettsia sp. in Hard Ticks Collected in Nacogdoches, Texas
<p>The number of cases of tick-borne diseases is increasing in the United States. Many efforts to control ticks have been made and are continuously being developed. These methods include surveillance of ticks and detection of the tick-borne pathogens.This study examined hard ticks in Nacogdoches, …
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Stability Study of Engineered Ferritin Nano-vaccines by Combined Molecular simulation and Experiments
… gyration (Rg), root mean square of fluctuation (RMSF), and the distance between subunits. While C1 and C2 were correctly assembled into a symmetric spherical shape, according to SEC-MALS and MD simulation, they had differing hydrodynamic diameters. C1 is extremely close to the unmutated HFn …