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Showing 1 to 3 of 3 for “"QIIME 2"”.
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Soil Microbial Community Response to Human Decomposition in Michigan's Upper Peninsula
… using 16S rRNA sequencing, processed with QIIME 2, and microbial community changes analyzed with R using alpha and beta diversity metrics and relative abundance.</p> <p>Results revealed that human decomposition significantly alters the soil microbiome over time. While differences between …
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UNDERSTANDING DIFFERENTIAL ABUNDANCE IN MICROBIAL ECOLOGY USING COMMUNITY STRUCTURE.
… to this work is the development of q2-Makarsa, a QIIME 2 plugin that provides a pipeline necessary to perform DAA using interaction network inference. q2-Makarsa exposes SpiecEasi and FlashWeave for the purpose of network inference, including the use of metavariables to represent exogenous …
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Influence of feed efficiency ranking and maternal nutrition on gut microbiome, metabolome, and transcriptome in beef and dairy cattle
… approaches. Microbiome data were analyzed with QIIME 2 platform whereas metabolome data were analyzed with MetaboAnalyst 4 pipeline. Hindgut microbiome and metabolome profiles indicated that M-eff heifers had greater capacity for energy production (e.g. butyrate and propionate) and essential …