Global ETD Search

Graphical pangenomics

Garrison, ErikUniversity of Cambridge2019

Completely sequencing genomes is expensive, and to save costs we often analyze new genomic data in the context of a reference genome. This approach distorts our image of the inferred genome, an effect which we describe as reference bias. To mitigate reference bias, I repurpose graphical models …

cambridge Repository record for Graphical pangenomics (opens in a new tab)

Computational Methods in k-mer-based Pangenomics

Schulz, TizianUniversität Bielefeld

bielefeld Repository record for Computational Methods in k-mer-based Pangenomics (opens in a new tab)

CHROMOSOME-LEVEL DE NOVO GENOME ASSEMBLIES OF AVIAN SPECIES AND THEIR RELEVANCE FOR COMPARATIVE GENOMICS, PANGENOMICS, POPULATION GENOMICS AND SPECIES CONSERVATION.

SECOMANDI, SIMONAUniversità degli Studi di Milano2022

… comparative genomics, population genomics and pangenomics analyses. Comparative genomics work was carried out with the reference-free aligner Cactus, with which I have aligned the barn swallow reference with other chromosome-level bird species. Using the alignment, I performed a positive and …

milano Repository record for CHROMOSOME-LEVEL DE NOVO GENOME ASSEMBLIES OF AVIAN SPECIES AND THEIR RELEVANCE FOR COMPARATIVE GENOMICS, PANGENOMICS, POPULATION GENOMICS AND SPECIES CONSERVATION. (opens in a new tab)

Scalable sketching and indexing algorithms for large biological datasets

Ekim, Bariş C.Massachusetts Institute of Technology2022

… such as read mapping, metagenomics, and pangenomics, as well as to provide ways to better store, search, and compress large collections of sequencing data.

mit Repository record for Scalable sketching and indexing algorithms for large biological datasets (opens in a new tab)

A tale of two clades: genome evolution of oomycetes and fungi.

McCarthy, Charley G.P.National University of Ireland Maynooth2019

… comparative genomics, phylogenomics and pangenomics research for two similar, but evolutionarily-distinct groups of important microscopic eukaryotes.

maynooth Repository record for A tale of two clades: genome evolution of oomycetes and fungi. (opens in a new tab)

Towards a Pangenome Perspective on the Lake Malawi Cichlid Radiation

Quah, FuUniversity of Cambridge2024

The cichlid fishes in the East African Rift lakes are one of nature’s most spectacular vertebrate radiations and form an excellent system to study the evolutionary process of speciation. Lake Victoria, Malawi and Tanganyika are each home to hundreds of species with a wide spectrum of sizes, …

cambridge Repository record for Towards a Pangenome Perspective on the Lake Malawi Cichlid Radiation (opens in a new tab)

Investigating virus-host interactions in a changing Arctic Ocean

V Jackson (13958969)2025

The Arctic Ocean (AO) is changing at an unprecedented rate, with sea ice loss, warming and freshening affecting microbial community dynamics, including primary productivity. In the Arctic, primary production is driven by eukaryotic phytoplankton and one picoeukaryote in particular, Micromonas …

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