Global ETD Search
Search theses and dissertations gathered from participating repositories worldwide. Every result links back to the library that holds it. No account is needed.
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Showing 1 to 5 of 5 for “"OrthoMCL"”.
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In silico prediction of host-pathogen protein - protein interactions in the malaria parasite, Plasmodium falciparum
… uses an ortholog clustering method called ORTHOMCL. ORTHOMCL is very suitable for ortholog clustering of malaria data for two reasons. Firstly, it is capable of distinguishing between recent paralogs and ancient paralogs, which enables the inclusion of recent paralogs together with …
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Interação funcional, expressão de genes e filogenia entre proteínas de membrana de Rickettsia spp. e carrapatos
… membrana foram avaliadas com o uso do aplicativo OrthoMcl adotando o BLASTP contra as proteínas do genoma de R. amblyommatis contra proteínas de outras espécies de Rickettsia. As proteínas ortólogas de membrana foram avaliadas quanto as características evolutivas através do método do Maximum …
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Identifying Pantoea Genetic Factors Involved in Host Association by Integrating Comparative Genomics with a Dictyostelium discoideum Grazing Resistance Model
… gene presence/absence analyses with Roary and OrthoMCL to identify additional virulence factors to explain the spectrum of grazing resistance within P. ananatis. Multiple candidate genes were identified in subsets of resistant strains including formate dehydrogenase-N, which may increase …
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A proteomic approach to investigate the response of tef (Eragrostis tef) to drought
… A reciprocal BLAST search through the use of OrthoMCL with all three differentially regulated datasets (foregrounds) showed the TE foreground to provide the most comprehensive total protein coverage for further bioinformatics inference. Bioinformatics analysis using the programs Mercator, …
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Development of a comprehensive annotation and curation framework for analysis of Glossina Morsitans Morsitans expresses sequence tags
This study has successfully identified transcripts differentially expressed in the salivary gland and midgut and provides candidate genes that are critical to response to parasite invasion. Furthermore, an open-source Glossina resource (G-ESTMAP) was developed that provides interactive features and …