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Showing 1 to 3 of 3 for “"Minhash"”.

  1. Read alignment using deep neural networks

    Shrestha, Akash, author, Chitsaz, Hamidreza, advisor, Ben-Hur, Asa, committee member, Abdo, Zaid, committee memberColorado State University. Libraries2019

    … proximity preserving hashing techniques, such as Minhash and Minimizers, were utilized to quickly map a read to the target region of the reference sequence. Subsequently, a variant of global or local alignment dynamic programming is then used to give the final alignment. In this research work, we …

    colostate Repository record

  2. Tackling the current limitations of bacterial taxonomy with genome-based classification and identification on a crowdsourcing Web service

    Tian, LongVirginia Tech2019

    … Sourmash, which is based on k-mers, and the MinHash algorithm. The potential of LINbase is shown by using examples of plant pathogenic bacteria.

    vt Repository record

  3. Variation-aware algorithms for cancer genome analysis

    Dawson, Eric ThomasUniversity of Cambridge2020

    … algorithm for genome analysis. I describe a MinHash toolkit for viral coinfection analysis and its application to Human Papillomavirus (HPV) samples. This toolkit is able to classify individual reads from multiple sequencing technologies and accurately detect clinically- relevant HPV …

    cambridge Repository record