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Showing 1 to 5 of 5 for “"Merfish"”.

  1. Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)

    … expert pathologist annotations, and direct MERFISH measurements. SCHAF opens the way to next-generation H&E2.0 analyses and an integrated understanding of cell and tissue biology in health and disease.

    mit Repository record for Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF) (opens in a new tab)

  2. Regulation of fate specification in stem cells of the planarian Schmidtea mediterranea

    … error-robust fluorescence in situ hybridization (MERFISH) and whole-mount FISH to characterize fate choice distributions of stem cells within planarians. Our analyses reveal that fate choices are frequently made distant from target tissues and in a highly intermingled manner, with neighboring …

    mit Repository record for Regulation of fate specification in stem cells of the planarian Schmidtea mediterranea (opens in a new tab)

  3. Multiscale Modeling of Genome Organization: Bridging Polymer Physics, Molecular Dynamics, and AI

    … data from Hi-C, TSA-seq, DamID, and DNA-MERFISH. The developed software is fully open-source and GPU-accelerated, enabling large-scale simu- lations and mechanistic explorations. In Chapter 3, we explore the impact of genome organization on various biological phe- nomena within the cell …

    mit Repository record for Multiscale Modeling of Genome Organization: Bridging Polymer Physics, Molecular Dynamics, and AI (opens in a new tab)

  4. SIM-FISH: Diffusion-based simulation for fluorescence image in situ hybridization

    Submission published under a 24 month embargo labeled 'U of I Access', the embargo will last until 2027-05-01

    uiuc Repository record for SIM-FISH: Diffusion-based simulation for fluorescence image in situ hybridization (opens in a new tab)