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Showing 1 to 3 of 3 for “"Genome-scale metabolic modeling"”.

  1. Characterization and genome-scale metabolic modeling of catechol-degrading Pseudomonas fluorescens isolated from a petroleum hydrocarbon-impacted site

    … performance, catechol, an important metabolic intermediate during monoaromatic hydrocarbon biodegradation, was chosen as the sole carbon source. A set of experiments based on a 23 factorial design was undertaken to investigate how nitrate, sulfate, and phosphate ions affect catechol …

    sask Repository record for Characterization and genome-scale metabolic modeling of catechol-degrading Pseudomonas fluorescens isolated from a petroleum hydrocarbon-impacted site (opens in a new tab)

  2. A tale of two microbes: Computational investigations of biological processes in escherichia and methanosarcina at multiple scales

    … response to stimuli are examined. A variety of modeling approaches are employed to capture phenomena at different scales. Using as model systems Methanosarcina acetivorans, an anaerobic methane producing archaeum adapted to niche environments, and Escherichia coli, a faculative anaerobic …

    uiuc Repository record for A tale of two microbes: Computational investigations of biological processes in escherichia and methanosarcina at multiple scales (opens in a new tab)

  3. Design and optimization of microbial communities

    … Synergies between computational methods and genome-scale metabolic models have been explored in the last years, as a way to unravel community interactions and behavior, as demonstrated by the numerous simulation methods developed for application in the context of microbial communities. The …

    minho-thes Repository record for Design and optimization of microbial communities (opens in a new tab)