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Showing 1 to 3 of 3 for “"Finite State Projection"”.
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Accelerating Finite State Projection through General Purpose Graphics Processing
The finite state projection algorithm provides modelers a new way of directly solving the chemical master equation. The algorithm utilizes the matrix exponential function, and so the algorithm’s performance suffers when it is applied to large problems. Other work has been done to reduce the size of …
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Simulation and control of dynamic directed self-assembly of nanostructures
… by external fields. The approach is based on Finite State Projection and is adaptive, i.e., it generates reduced-order models that vary over time. The algorithm uses event-detection concepts to determine automatically, during simulation, suitable time points at which the projection space and …
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Stochastic and physical modeling of fundamental biological processes
… DNA looping using a third transcriptional state. We exploit the fast bursting dynamics of mRNA by combining a novel geometric burst approximation with the Finite State Projection method. This limits the number of protein/mRNA states, allowing for an accelerated search of the model's …