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Showing 1 to 3 of 3 for “"Circular Binary Segmentation"”.
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Computational Analysis of Genome-Wide DNA Copy Number Changes
… CIN indices are derived from detected CNAs using circular binary segmentation and wavelet transform, which calculates a score based on both the amplitude and frequency of the copy number changes. We generated CIN indices on ovarian cancer subtypes' copy number data and used them as features to …
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Comparative analysis of algorithms for identifying copy number variation in array CGH data
… copy number variation in array CGH data. Circular Binary segmentation (CBS), CGH segmentation, Price —Smith—Waterman algorithm (the three algorithms are a part of ADaCGH tool) and Cluster Along Chromosome (CLAC) which is not publicly available were studied and used for the analysis of …
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BIOLOGICAL AND MOLECULAR CHARACTERIZATION OF CMA-03/06, A NEWLY ESTABLISHED INTERLEUKIN-6 INDEPENDENT VARIANT OF THE CMA-03 HUMAN MYELOMA CELL LINE.
… using the DNAcopy Bioconductor package, based on circular binary segmentation method. Global gene expression profiling (GEP) was performed by means of the GeneChip Human Gene 1.0 ST Arrays (Affymetrix); the supervised analyses were done using the rank Prod method and a 2 fold change cut off. The …