Global ETD Search
Search theses and dissertations gathered from participating repositories worldwide. Every result links back to the library that holds it. No account is needed.
Results
Showing 1 to 2 of 2 for “"Bowtie 2"”.
-
Efficient parallelization of Bowtie 2 with OpenCL on GPU
… and developers. Among all the sequence aligners, Bowtie 2 is one of the most commonly used, due to its high speed and accuracy. This thesis presents a parallel implementation of Bowtie 2 with OpenCL, which is a parallel programming model that is becoming widely known and receiving great interest …
-
FPGA acceleration of short read alignment with high-level synthesis
… room for improvement. This thesis improves on Bowtie 2, an aligner that is already very popular and high-performing. Through the use of OpenCL, it is possible to parallelize this application for both GPU and FPGA by using the same code. Several different levels of parallelism are implemented in …