Global ETD Search
Search theses and dissertations gathered from participating repositories worldwide. Every result links back to the library that holds it. No account is needed.
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Showing 1 to 10 of 10 for “"Alignment tools"”.
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Performance comparison of five RNA-seq alignment tools
… accuracy to enable meaningful benchmarking of alignment algorithms. To provide guidance in the choice of alignment algorithms, five different alignment tools for RNA-Seq data are evaluated. In order to compare the accuracy and sensitivity of the Bowtie, Bowtie2, GMAP, Tophat and GNUMAP tools, …
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Development of Bioinformatic Tools and Procedures to Computationally Support DNA Barcoding
… improved pipelines for investigating nucleotide alignments as part of DNA barcoding and DNA metabarcoding. In addition, the existing barcode regions were investigated to discover if possible mini-barcodes could be used in order to improve identification in a wide range of plant species. The …
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UTR prediction programs for trypanosoma brucei
… in the need for use of various sequence analysis tools. As we advance in the fields of science and technology, new programs and software are constantly being developed in this field. Rapidly expanding gene sequence databases and rapidly evolving sequence analysis tools are providing researchers …
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Read alignment using deep neural networks
Read alignment is the process of mapping short DNA sequences into the reference genome. With the advent of consecutively evolving "next generation" sequencing technologies, the need for sequence alignment tools appeared. Many scientific communities and the companies marketing the sequencing …
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An Efficient Primer Selection Process Combining Progressive and Iterative Multiple Sequence Alignment Strategies: ClustalW and HMMER
… for every need, evaluation of multi-sequence alignments may provide a reliable source for primer candidates. However, an exact mathematical solution for multi-sequence alignments, using currently available computational resources, is only viable for a very small number of sequences. Any …
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Fusing Automatically Extracted Annotations for the Semantic Web
… framework to exploit results of automatic schema alignment tools and proposed our own schema matching algorithm aimed at facilitating data fusion in the Linked Data environment. We conducted experiments with this approach and obtained a substantial improvement in performance in comparison with …
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Advancing Electrical Stimulation: Full-Head MRI Segmentation for Abnormal Brain Anatomy with tDCS
… dependent on accurate MRI segmentation and head alignment—factors that are often compromised in stroke patients due to abnormal brain anatomy. Existing pipelines like SPM12 and Multipriors frequently fail in such cases, often leading to inaccurate current flow predictions due to misalignment and …
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On the development and application of a photon counting imaging system for broad spectrum luminescence analysis
… designed and constructed, and special optical alignment tools and methods were developed and applied. A bespoke programmable control unit (the IICU) was designed and built, providing independent numerical control of multiple optical stimulation sources, with programmable generic interfaces to …
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On the development and application of a photon counting imaging system for broad spectrum luminescence analysis
… designed and constructed, and special optical alignment tools and methods were developed and applied. A bespoke programmable control unit (the IICU) was designed and built, providing independent numerical control of multiple optical stimulation sources, with programmable generic interfaces to …
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Tiger: tiled iterative genome assembler and approximate multi-genome aligner
Sequence assembly and alignments are two important stepping stones for comparative genomics. With the fast adoption of the next-generation sequencing (NGS) technologies and the coming of the third-generation sequencing (TGS) technologies, genomics has provided us with an unprecedented opportunity …