Global ETD Search
Search theses and dissertations gathered from participating repositories worldwide. Every result links back to the library that holds it. No account is needed.
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Showing 1 to 10 of 10 for “"454 sequencing"”.
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Characterization of chalcone synthase genes in red raspberry cultivar (rubus idaeus)
… (Rubus idaeus) cv. Glen Moy (SCRI), using 454 sequencing technology assisted by a systematic construction of fosmid libraries. The two BACs (29M05 and 24B12) always presented similarities in almost analyses resulting from the presence of a 53 kb overlap that was revealed by assemblies of …
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Probabilistic arithmetic automata : applications of a stochastic computational framework in biological sequence analysis
… reads resulting from modern high throughput sequencing technologies such as 454 or Solexa/Illumina. Viewing biological sequences, such as DNA and proteins, as strings allows their investigation under a generative random string model. That is to say, one can define a probabilistic null model …
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A Metagenomic Study of The Tick Midgut
… ticks by using high throughput metagenomic sequencing to sequence bacterial 16S rDNA. Through the use of massively parallel 454 sequencing, we were able to individually sequence hundreds of thousands of 16S rDNA regions of the bacterial flora from 133 ticks from the New York, Missouri and …
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Plant genotype, immunity and soil composition control the rhizosphere microbiome
… characterised using ARISA DNA fingerprinting and 454 sequencing. Rhizosphere bacterial and fungal communities are different from those in bulk soil and there are also differences in the microbial community between different plant species. Plants both select and suppress specific bacteria and fungi …
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De novo assembly of transcriptome and genome data from the Asia I mtCOI genetic clade of Bemisia tabaci
… 0.864 million reads generated using the Roche 454 sequencing platform. A total of 29,418 contigs produced using CLC Genomics of which 8,563 were assigned putative functions. A draft genome 828 Mbp of the Asia I population was produced through de novo assembly of 206 million 250 bp paired-end …
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Identification of Quorum Sensing Genes in Hypersaline Microbial Mats
… showed consistent putative QS activity. Using 454-sequencing technology, we have sequenced the fosmid inserts of 11 clones, which demonstrated strong biosensor activation. Among a host of hypothetical proteins, we have identified LuxO and LysR; known to be transcriptional regulatory proteins. …
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Antimicrobial activities and diversity of sponge derived microbes
… and archaeal diversity by application of 454 Pyrosequencing. The L. diversichela –proteobacterial community was dominated by a single ƴ-proteobacterial bacterium whereas the S. normani sample hosted a largely sponge specific microbial community, even more diverse than has been previously …
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Identification and functional characterization of microRNA regulatory elements in Brassicaceae
… view of microRNA390 regulatory network. Based on 454 sequencing technique, took the microRNA sequences of sequenced Arabidopsis as reference, by assembling and aligning the microRNA promoter sequences, calculated the PWM and predicted the putative motifs with both MEME program and PlantCARE …
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A genomic analysis of the insect pest populations of cowpea in West Africa
… these with the recent advances in genome sequencing technologies. This dissertation consists of five chapters and focuses on the integration of integrated pest management (IPM) and the current trends in genomic sequencing to cowpea IPM in West Africa with the aim of better understanding …
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The evolution of freeze tolerance in a historically tropical snail
… zone by Melampus. Using massively parallel sequencing, I have isolated > 500,000 expressed sequence tags and assembled these into ~20, 000 seasonally expressed transcripts. A comparison of these transcripts has revealed 2 candidate markers to test for their association with freeze tolerance …