Characterization of FPGA-based High Performance Computers

As CPU clock frequencies plateau and the doubling of CPU cores per processor exacerbate the memory wall, hybrid core computing, utilizing CPUs augmented with FPGAs and/or GPUs holds the promise of addressing high-performance computing demands, particularly with respect to performance, power and productivity. While traditional approaches to benchmark high-performance computers such as SPEC, took an architecture-based approach, they do not completely express the parallelism that exists in FPGA and GPU accelerators. This thesis follows an application-centric approach, by comparing the sustained performance of two key computational idioms, with respect to performance, power and productivity. Specifically, a complex, single precision, floating-point, 1D, Fast Fourier Transform (FFT) and a Molecular Dynamics modeling application, are implemented on state-of-the-art FPGA and GPU accelerators. As results show, FPGA floating-point FFT performance is highly sensitive to a mix of dedicated FPGA resources; DSP48E slices, block RAMs, and FPGA I/O banks in particular. Estimated results show that for the floating-point FFT benchmark on FPGAs, these resources are the performance limiting factor. Fixed-point FFTs are important in a lot of high performance embedded applications. For an integer-point FFT, FPGAs exploit a flexible data path width to trade-off circuit cost and speed of computation, improving performance and resource utilization. GPUs cannot fully take advantage of this, having a fixed data-width architecture. For the molecular dynamics application, FPGAs benefit from the flexibility in creating a custom, tightly-pipelined datapath, and a highly optimized memory subsystem of the accelerator. This can provide a 250-fold improvement over an optimized CPU implementation and 2-fold improvement over an optimized GPU implementation, along with massive power savings. Finally, to extract the maximum performance out of the FPGA, each implementation requires a balance between the formulation of the algorithm on the platform, the optimum use of available external memory bandwidth, and the availability of computational resources; at the expense of a greater programming effort.

Name thesis:degree_name

Master of Science

Level thesis:degree_level

masters

Discipline thesis:degree_discipline

Electrical and Computer Engineering

Department dc:contributor.department

Electrical and Computer Engineering

Grantor dc:publisher

Virginia Tech

Year dc:date.issued

2011

Author dc:creator

• Pimenta Pereira, Karl Savio

Chair dc:contributor.committeechair

• Athanas, Peter M.

Committee members dc:contributor.committeemember

• Schaumont, Patrick R.
• Feng, Wu-chun

• FFT
• molecular dynamics
• integer-point
• floating-point
• GPU
• HPC
• Field programmable gate arrays

Statement dc:rights

• In Copyright

Licence dc:rights.uri

• http://rightsstatements.org/vocab/InC/1.0/

Dc Identifier Other

etd-08112011-192508

OAI identifier oai:identifier

oai:vtechworks.lib.vt.edu:10919/34483