Integrating Genomic and Phenomic Breeding Selection Tools with Field Practices to Improve Seed Composition Quality Traits in Soybean

Despite soybean's widespread recognition as a versatile and valuable crop due to many end-use purposes, breeders seek to develop varieties with improved nutritional and functional components that capture added-value for producers. Additionally, producers seek to maximize profits by utilizing field practices to augment crop value. Therefore, this dissertation had two main objectives of maximizing soybean value: 1) to evaluate accelerated selection methods by soybean breeders for methionine content and test weight, and 2) to identify sulfur fertilization impact on soybean seed composition including amino and fatty acid profiles. First, a genome-wide association study (GWAS) analyzed genomic influence on proteinogenic methionine in soybean seeds which identified 23 single nucleotide polymorphisms (SNPs). Utilizing a SNPs subset identified by GWAS, genomic selection (GS) exhibited average prediction accuracies ranging from 0.41-0.62. Secondly, a novel phenomic selection (PS) method using near-infrared reflectance spectroscopy (NIRS) was evaluated for predictive ability of soybean test weight. PS cross-validations exhibited average predictive accuracies of 0.75, 0.59, and 0.16 when incorporating all environments, between locations, and between years, respectively. Finally, sulfur fertilizer rates and sources were assessed across two years and six locations in relation to seed composition. Notably, ammonium sulfate (AMS) was found to have a significant impact (P < 0.05) on methionine content in soybean seed. These outcomes will have positive impacts on plant breeding and soybean production for seed composition and quality traits using contemporary breeding and fertilization.

Name thesis:degree_name

Doctor of Philosophy

Level thesis:degree_level

doctoral

Discipline thesis:degree_discipline

Crop and Soil Environmental Sciences

Department dc:contributor.department

Crop and Soil Environmental Sciences

Grantor dc:publisher

Virginia Tech

Year dc:date.issued

2021

Author dc:creator

• Singer, William Monte

Chair dc:contributor.committeechair

• Zhang, Bo

Committee members dc:contributor.committeemember

• Holshouser, David L.
• Raubenstine, Scott
• Mian, Rouf
• Huang, Haibo

• soybean
• methionine
• amino acids
• fatty acids
• genome-wide association
• genomic selection
• phenomic selection

Statement dc:rights

• In Copyright

Licence dc:rights.uri

• http://rightsstatements.org/vocab/InC/1.0/

Language dc:language.iso

en

Dc Identifier Other

vt_gsexam:33117

OAI identifier oai:identifier

oai:vtechworks.lib.vt.edu:10919/106789